Array 1 310-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAVL01000008.1 Chryseobacterium indologenes NBRC 14944, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 309 47 83.0 30 A.CT.AT..CAT................................... CATTTTAATGCTTACAGAATCGTCTGATAA T [286] 231 47 100.0 30 ............................................... AGGTAATCAAATGTATAGTTGAAGAAGGGG 154 47 100.0 30 ............................................... ATTTCTAAATCTCTCATTATACCGTCGACC 77 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 95.8 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Left flank : AAGGTGTGTTTCAAGGTCAGCCGGTTTTTTGTCTTTTTCAGTTACGGAAGCCGGATCAACTTTAATAGAAGTCATATCTATAGTAAAGCTTCCTGCTACAAGCTGCCCACCTTCAATATTCAGGTCGCCTGATTTTATGTTTAAGGTACCCCAACGAGGTGCAAAACCTCCTTTGTGGAAAGCTTTCCAGTTTACTACAGAAGTTACCGTATCTACTGCTAATGCTTCTCCTTTTCCTTCAGCAACAGACTGTTCAGTAGCTACTGCTGTATCGGTTGTTTTTTCTTTATTGTTACATGATACTGCCAGTAATCCTACTGCTACCAATGCAATTACGCTAATTTTTTTCATATTGAACTGTTTAAATAAGTTTGTTGAAATCTTTGTTGTTTTCGGTTACAAAAATAGAAAAACATTATTATTGACATCTTATCATATATCAAGAAATGCGATAAGACAGTTTATTTGAACTTATGAATAAAAATAATGTGATACTTAGA # Right flank : CTTTGGAAGTTGGTAAATATCACAGATTTCC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 477963-475529 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAVL01000007.1 Chryseobacterium indologenes NBRC 14944, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 477962 47 100.0 30 ............................................... ACCATCGCCTGCGCCTGTTGGATAATATGG 477885 47 100.0 30 ............................................... CATAACATTATCGATTTCATTTTCTAATGC 477808 47 100.0 30 ............................................... TAGGTTCACGCGTGCTAATTCAGCCGCAAC 477731 47 100.0 30 ............................................... ACGAGATCGGATTCGATCTGGATTGACTTC 477654 47 100.0 30 ............................................... ATTAGTCATCATTTCTACCTTAATCGCAAC 477577 47 100.0 30 ............................................... AATATTGCTTCCAATTAGATGGCATTGTAT 477500 47 100.0 30 ............................................... TATCGTTATCTAGTCGAATTAAGCGTTTTT 477423 47 100.0 30 ............................................... ATTGTTTTTTCAGCCTCAATTCTTTTTGTT 477346 47 100.0 30 ............................................... GTGACTACAGCATTTAAATACCACATCACT 477269 47 100.0 30 ............................................... AGACACTTCCAAGGCATTAGCTATCTCTTG 477192 47 100.0 30 ............................................... AATTACACCTTGGGGACATTGGGCTGTTTC 477115 47 100.0 30 ............................................... TTACCTGTGACGTATCTGATATAATTTCAT 477038 47 100.0 30 ............................................... AAAAGGTATTGCAGTTTGGTTAATCAGCAT 476961 47 100.0 30 ............................................... TAAAGACAACATAAGGAGTTGCTACCTTCA 476884 47 100.0 30 ............................................... GAATATCCATTTTGAGCAAACAGCACTCCA 476807 47 100.0 30 ............................................... AAATTCGATATTTTGTCCCAACGTGGACTT 476730 47 100.0 30 ............................................... TCATCCAGACCGGAACTCATGAGCTTTTAG 476653 47 100.0 30 ............................................... GTTCTTCGTTTCGCCTTCCATGCTTCGAAC 476576 47 100.0 30 ............................................... ACGCTGTAGACAGATTTGTTTCGCCGCATG 476499 47 100.0 30 ............................................... GTAGCTTTTATGAAGTAGCACCCGGCGTAC 476422 47 100.0 30 ............................................... CAGGCAAAATTTCCCTTAAAGCGTTGGGGT 476345 47 100.0 30 ............................................... CGAACTGTGATTGCTTACCTTCGTTGTTCA 476268 47 100.0 30 ............................................... CGTAATAAACGATACAACTCAATTCTATAT 476191 47 100.0 30 ............................................... CACGAACGCCGTACGTTAGGGGGCAGCGCG 476114 47 100.0 30 ............................................... ACTCGCCAGTACTTTTAATGCTCTCCCACT 476037 47 100.0 30 ............................................... CTGTGACTTGCTGGCCGCCTTTAGGAAATA 475960 47 100.0 30 ............................................... GGGGCTTTTGATTTCAAAACATATAATGGT 475883 47 100.0 30 ............................................... GATGGGCTAGATGAATATATATATTATACG 475806 47 100.0 30 ............................................... TTGCAACTGTATATCATGAGACAGGTGCTA 475729 47 100.0 30 ............................................... TGCCCGCAGCAATGAAGCTAAGGAACTCGG 475652 47 100.0 30 ............................................... TTGTTCCGGTTCTTCAGTATTGAAAAGCCA 475575 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 32 47 100.0 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Left flank : ACGCATCTCTCCTATCTGCTTTGCTTTTC # Right flank : CTCAAAAAACAATCCACTGAAAATCAGTAGATTGTTTTTGTTTTTTAGGATTTTAAATTTAGAATAATTCAAGCTGTTGAAAAGTTGGAGGAGGTTCTTCTTTATTTCTGGCAAAAAATATTTCAATATCTCCAAATTGTTTATCCGTAATACACATAATAGCAACTTTTCCAGCTTTTGGAAGCATAAATTTCACTCTTTTAATATGAACCTCAGCATTTTCACGACTTGGACAATGCCTTACATACATTGAAAACTGAAATAACGTAAAACCATCATCAAGCAAAGATTTACGAAACCGGTTCGCATCTTTCATGTTAGCTTTAGTTTCTGTTGGCAAATCGTATAATACTAAAACCCACATAATTCGATAAGCATTAAACCTTTCGGCATTCATATCAATTTAGGATAAGAGATCAATCGTTTTTCACCTGTATAGCATTTATATAGAGACATGGCTGTTGTTTTTACTGCAATCAATAATGGTCTGATTTTATCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //