Array 1 8812-9815 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQPP01000032.1 Escherichia coli strain EP088 Scaffold32_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8812 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 8873 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 8934 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 8995 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 9056 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 9117 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 9178 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 9239 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 9300 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 9361 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 9422 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 9483 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 9543 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 9604 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 9665 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9726 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 9787 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 91016-92325 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQPP01000018.1 Escherichia coli strain EP088 Scaffold18_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91016 29 100.0 32 ............................. ATCACGTTAACAGCACCGGAGGCGAGGTCCGC 91077 29 100.0 32 ............................. CAGCGCGAACGGCTGCCCCTCGCCTTTAATCC 91138 29 100.0 32 ............................. AAACTAATAGAGCGTACTACCGGCCTGGTGGT 91199 29 96.6 32 ....A........................ CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 91260 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 91321 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 91382 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 91443 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 91504 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 91565 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 91626 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 91687 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 91748 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 91809 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 91870 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 91931 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 91992 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 92053 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 92114 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 92175 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 92236 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 92297 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //