Array 1 2650-4200 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAF01000050.1 Cronobacter malonaticus strain MOD1-Md99g Md99g_S1_L001_R2_001_trimmed_contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2650 29 96.6 32 ...................A......... GTTATAGGTGCCACGGATAGAATTTTTATCAA 2711 29 96.6 32 ...................A......... AACAGGAAACGGTTTTCATCAGTACATTGCCG 2772 29 96.6 32 ...................A......... GTTGATGTTACTGAACGCTTTCAACTTAGTGG 2833 29 100.0 32 ............................. GGGTGTTCGTTGTCGATGGCGCTACGTCAGGC 2894 29 100.0 32 ............................. AGCTGCGGACAACGTCTCTTCTATGCGGCTGA 2955 29 100.0 32 ............................. TTAGGCGGCGCAAAAGTCTCACACCTTCACCC 3016 29 100.0 32 ............................. ATGGGGCTCGGAGATTTTGTTTTCTCTATATC 3077 29 100.0 32 ............................. TGGTGGCGAATAAACTGCGCGCGATCACGTAC 3138 29 100.0 32 ............................. GTACATATCTGTCTATCCCACCTCTCAACGCA 3199 29 100.0 32 ............................. CGCCGCATACTCGCAAAACGCTACGCTCCGAT 3260 29 100.0 32 ............................. CCTTGCCGCTCTTGCGATTAGCCCGGAGCGGA 3321 29 100.0 32 ............................. ATTCTGACGGTATCGGTGACGGTATCGAAACA 3382 29 100.0 32 ............................. ACCATTTACACCGAGTGCAAATATCAGGGCGC 3443 29 100.0 32 ............................. GGATGAAACCGAAGACGCGCAAAAGCGGCTCG 3504 29 100.0 32 ............................. GGCTTACCGCCCTACAGCCAAAAACCTCTGTT 3565 29 100.0 32 ............................. AGCGGGAGCTGGCGCGTATAGCGCTGGACTGG 3626 29 100.0 32 ............................. CCGCTAAATTCAAGAGCTACAGCTCCCGTAAC 3687 28 96.6 32 .............-............... GGTTAGGAAAACCAAAAGGCGCTGGCGCGAAA 3747 29 100.0 32 ............................. CACACCACATCACCGGCACAAGACGGCGCGCG 3808 29 100.0 32 ............................. GATGGGCGCAGCCCGGATGTTGAGCCTTTCTA 3869 29 100.0 32 ............................. ATCTGCACTTCTGGCAACGTTTTGGTAATGCC 3930 29 96.6 32 ...................T......... GCAATCGACGGGCTTAAAGAGGTGCAGGAGTC 3991 29 100.0 32 ............................. ACGGTGGACAGGGTTAGGGGCGATAAAATATT 4052 29 100.0 32 ............................. AAAATAACCGAAGGGTTTTTTAAAAGCGGTTC 4113 29 93.1 32 ..A.........T................ TCGTAGTACGCCTTAACGGTTTCGGCGCGGAT 4174 27 82.8 0 ...........-.-...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGAATGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTCCACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTAATTGAAACCGAGCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGACATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGGTTTACGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTACATCTGATGCAGCGGGAAATGACCGCTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30856-31922 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAF01000050.1 Cronobacter malonaticus strain MOD1-Md99g Md99g_S1_L001_R2_001_trimmed_contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30856 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 30917 29 100.0 32 ............................. GCCGGTCACAGGGTTGTCGGAGTTCCTGAACA 30978 29 100.0 32 ............................. GGCACGTTGGCTGCCCGCCGATTATTGCCGTC 31039 29 100.0 32 ............................. GGCGCGCGGTACCGGCACAGGAGGTTGACCAC 31100 29 100.0 32 ............................. TCAGCCGGCACCAGACGCAGCGTCAGGTTACA 31161 29 100.0 32 ............................. ACGGATGAAGTCGGGAAGGGTCAGGTCCGCAT 31222 29 100.0 32 ............................. CGAGAGCAATAGTGAATGGGTGCCCGGTCATC 31283 29 100.0 32 ............................. AACTGTGAGATTACGCCGTACCTTTACCGTGC 31344 29 100.0 33 ............................. CACCAGCAGCTCCCCGGCGGCTTTTCGCCCTAC 31406 29 100.0 32 ............................. AACGCTACGCCGCCGCCGCTGAGGCGGCAGGG 31467 29 100.0 32 ............................. GACGGGCGAGAGCGCCAGAAATCTTCGCGCCA 31528 29 100.0 32 ............................. CGCGCGAATCCGGCCCAGGTCTTGTTCTGCCA 31589 29 100.0 32 ............................. TGTTCTGGACTTGCGACGAGCACAAAACTGAC 31650 29 100.0 32 ............................. CCCAGCCTAACGAGGATTGGGCATTAACGTCG 31711 29 100.0 32 ............................. TGGGTGATGCCAAAAAAGAGCGCCTGGGCTAT 31772 29 100.0 32 ............................. GTGATTTCACGCCGGAGGAATACGGGCAAATC 31833 29 100.0 32 ............................. CCTTACCAGTCCTTTGATTATGAGGAGAGAAG 31894 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCTAGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //