Array 1 255-1840 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQS01000020.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b x_contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 255 29 100.0 36 ............................. CCAAGCGGATTTAGAAAATGTTTTTAGACAAAAAGC 320 29 100.0 37 ............................. CCCACGTAGCAAATGAAAGAATGGCTAGTGTAGTTTA 386 29 100.0 37 ............................. CGCAACAACAAGATATTTGATGAATTTTTTGAGCGTG 452 29 100.0 36 ............................. CAAATCCTACCCCAAGCACTGATGAGAATGTGCAAA 517 29 100.0 35 ............................. CCTGATATCAATGACAACCAAACAATAAGCGAAGG 581 29 100.0 35 ............................. CAAACTCTTATATTTCCAAAATCTTTATTCTCAAA 645 29 100.0 36 ............................. CACACCAGTTTTAGCTGAGATGGCATCAGTTAATGT 710 29 100.0 38 ............................. CATCCAGCTCTCAGCCCAAGCTATTTGTGCTTGTGATT 777 29 96.6 35 .C........................... CTCAAATATTTTTGGCAATGAAATAGATTTATCAT 841 29 100.0 36 ............................. CCAAATTGAGCTAAAAGCACCAAAAACACAGTTTAA 906 29 100.0 35 ............................. CTTGATGATGTTGAACTTATGCAATACATAGGATT 970 29 100.0 38 ............................. CTGCTTAATGATTTTTTAGCTCTTTTTAACTCGATAAA 1037 29 100.0 34 ............................. CTAAATTAGTGCTTAGATTTTCATTATTTAGCCT 1100 29 100.0 35 ............................. CACCACGACATCCAGCCATATTACATCCTTTCTAT 1164 29 100.0 34 ............................. CAGCGTAAATCGTCTCATTGCTTTTTGGTGTGAA 1227 29 100.0 37 ............................. CCCTCAAGTAGATACGCAAAGTGACCTTTGCCATCAG 1293 29 100.0 36 ............................. CTGATAGTTTTCAAGCTCTAGGATCGGATTTATTGC 1358 29 100.0 37 ............................. TCGTCGTTCGCTTGTCGTACCTTGGCGAATCGAGCTA 1424 29 100.0 35 ............................. TAAGTAGAAGGCTAATAGCTTGCTGGCCTTATGTG 1488 29 100.0 38 ............................. TTACACAAAGTAGATGATGAAAACTACCAAAACACCTA 1555 29 100.0 34 ............................. TGCATAACTTTTACTTCTGTTCCACCATTAGCCT 1618 29 100.0 35 ............................. TCCAGATTTATTTCCAAGCTCTATTTGCAAAGCAG 1682 29 100.0 37 ............................. TAAAGTGCACTTAGCACAAACTACAGTACAGGCATTT 1748 29 100.0 35 ............................. CAATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 1812 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.9 36 GTTTCAAATCCTAAAAGGATAAATTTATA # Left flank : GCATTTCATCACTACTAACAAATACAAGCTCAATCTCTGCTTTAGTAAGCTCATCGCATATATCATCTAAAATACTAGGGTAATTTGTATCACAAAGTATCAAATTTAGTCCTTGGTGTGAATTAAATCAATCGGCTTTTTTGCAATTATTATTTGCTTATTTTATATAAAATCAAAGATTTTAAAGCACTATTAAAACCGATTAAATTTAGCTATAAAAATTATGGTAAAACTATACGCAAAATATAGCCCTAG # Right flank : CGAGAGTTCATAGATATGACTTTCAGAGAGTATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1-491 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQS01000023.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b x_contig000023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 30 100.0 34 .............................. AATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 65 30 100.0 37 .............................. GAGAGTTCATAGATATGACTTTCAGAGAGTATGATAA 132 30 100.0 38 .............................. CCTAAGCACTCTTCCTAAAATATCTTTTAAAGAGTTTT 200 30 100.0 38 .............................. GGAGTTGGGTGTTTTGGCTTTCAAAGCATTAGCTTATT 268 30 100.0 34 .............................. TTGAAACGGTTTTGTAGCTCTGATAGTCTTCAAA 332 30 100.0 34 .............................. CTTCTCTTTTTGCCCTTGCGTCTTCTAAAGCCTT 396 30 100.0 36 .............................. GTTTTCTTTGAGTAGGAAGTTTATCTACTATCATCA 462 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : | # Right flank : CAGCAACAAAAACAGCTAAATTTAGTATTTTGTACCAAGTTTTACGATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTAGGCAAAAGTTGATCCATAAATAAATCTAACTTAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACACTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 8306-10690 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQS01000012.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b x_contig000012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8306 30 100.0 34 .............................. ATCTTATTTTTATCCTTTTTATTCAAATTCTTTA 8370 30 100.0 34 .............................. CCATTATTATAATTATGTGATATCTCTTTGTACT 8434 30 100.0 35 .............................. TCAAGAATGGACAACTTGGAGCTTAGAAAACTTCA 8499 30 100.0 37 .............................. AGAGACGATGAAGACTATAAGACAAATAGAGATTATC 8566 30 96.7 35 ........C..................... CTTTGCTTCAATAGACAGCTCATCCCTAATATCAG 8631 30 100.0 34 .............................. ATATAGCAAATGATATTAAATCAAAATGTACAAA 8695 30 100.0 36 .............................. AGGATCGTCTTCATCTTGCTCTTCTAATGCTTCTTC 8761 30 96.7 35 A............................. CATATAGAGTTTTCTAAAAGTTGTTTAAAAAACAG 8826 30 100.0 33 .............................. CTTTTGGTCTTACAACTATCGCACCCATTGCCA 8889 30 100.0 35 .............................. ATCACTTAGGTTTAGTCCGGTTTGAAGAGTAGCTA 8954 30 100.0 36 .............................. TTTGTTCCTTTGGAATAAAATCAATTAAAGTCTTCA 9020 30 100.0 36 .............................. CAAGCCCCTCATTATTGCCCTTATATTCGCCTTTTT 9086 30 100.0 33 .............................. CGTAGCCGTATTTTTCATGAGCAACGCTAGGGA 9149 30 100.0 36 .............................. CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAGAA 9215 30 100.0 36 .............................. ACAATGAAGACGAAGTTAAAAACTTCGTAGAAATGG 9281 30 100.0 37 .............................. ATCAACTCGCAAAAGCTCGTTAAAATTCTCATTTTTG 9348 30 100.0 34 .............................. AAGGAATACCCTTATATACAGTCTTTTTATAGAC 9412 30 100.0 36 .............................. CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAGAA 9478 30 100.0 34 .............................. TATGGGCGCTTGACGTTGCAAGGTATGGCGATGA 9542 30 100.0 35 .............................. AAAGCAATAGCAGAAGCTAGGGAAGAGTTCGCTAC 9607 30 100.0 37 .............................. TCTAAATTTTGGCAACATTCATAAGAAACTCCTTACA 9674 30 100.0 36 .............................. TTTCACGTCTTTTAACACTAGTGCCACTTTCAAACA 9740 30 100.0 35 .............................. TAAAGGTAGCCCACTGAAGGAGTGTGAGCTTAAGA 9805 30 100.0 35 .............................. TGTTATCAGCGTCTCTTGTCTCACGCAACCTTGCA 9870 30 100.0 35 .............................. ACCGCCAAGCCCAAGCATAGCACTAGCAGTAGCTA 9935 30 100.0 35 .............................. AAAAAACAACTACTAGACCACGGACAAATCAGCCG 10000 30 100.0 36 .............................. TAGCTTTAGCTATTTCTGTTTGAGTTCTAGCTTGTT 10066 30 100.0 37 .............................. AGAGACGATGAAGACTATAAGACAAATAGAGATTATC 10133 30 100.0 37 .............................. ATTATTTTGAAAAATGCTAGTCTTTGGGATAACTCAA 10200 30 100.0 38 .............................. GCTTTTTTCAAGACAGATAAAATAGCACTTGTGGATTA 10268 30 100.0 36 .............................. TGAGCTGAAAAAATACCTTTGCAAGTTTGGCAAAGA 10334 30 100.0 38 .............................. GCTTTTTTCAAGACAGATAAAATAGCACTTGTGGATTA 10402 30 100.0 36 .............................. AGAGCAAATCAAGCTGGTCGATTGGCTCAGGGTGAA 10468 30 100.0 33 .............................. TATAAATTTATCTTGCCTTTGCATCCAAATCAT 10531 30 100.0 36 .............................. GTTTTTAAGAGATGAGTTAATACAAGAAGATAAAGC 10597 30 100.0 34 .............................. AATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 10661 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 37 30 99.8 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GAGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGGCAGTTAAGTCTCATTAAAATAATAACCAAAATAAAAAGAATAAAACTAAACATCTACAAGCCTTTTTTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATCAACAAAACAGCCACTACTCTAAGTGATGCCTTAGACAAAAATATCAAAACAGCTACAACAGCGATAAAAAAACGCAAATCATAAAAA # Right flank : GAGAGTTCATAGATATGACTTTCAGAGAGTATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //