Array 1 19-719 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOL01000046.1 Salmonella enterica strain NGUA-13_S1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 80 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 141 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 202 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 263 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 324 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 385 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 446 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 507 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 568 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 629 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 690 29 93.1 0 A...........T................ | A [716] ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCACACCCCGATCCCCCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5547-6733 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOL01000060.1 Salmonella enterica strain NGUA-13_S1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5547 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 5608 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 5669 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 5730 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 5791 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 5852 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 5913 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 5974 29 100.0 32 ............................. TCCGGCAAAAATCCAGACCGACGGCGCAATGG 6035 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 6096 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 6157 29 100.0 32 ............................. TACGGAAACATACGGCGCCCATTGCTTTTTCA 6218 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 6279 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 6340 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 6401 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6462 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6523 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6584 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6645 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6706 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23003-25289 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOL01000060.1 Salmonella enterica strain NGUA-13_S1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23003 29 100.0 32 ............................. ATTGCAGTCAAAGTCGGCATCGTGTCACCGCC 23064 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 23125 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 23186 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 23247 29 100.0 32 ............................. CCTCAGACGCTGGCATGGTTCCGTATGCCGTA 23308 29 100.0 32 ............................. CCGCGCAACGAGTGTTTTGCGAAACCGGCAAA 23369 29 100.0 32 ............................. GAATACAAATTCGTTGCCATCATCGCTTGCCG 23430 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 23491 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 23552 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 23613 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 23674 29 100.0 32 ............................. CGCCATATCAGCGTGGCGCGCTCTCCCGTTTA 23735 29 100.0 32 ............................. GGATCGCGATTTTGCCGATTACCGGGACGCTG 23796 29 100.0 32 ............................. AGCTGGCGGATCTGTTCGTCACTCAGGCGGGT 23857 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 23918 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 23979 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 24040 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 24101 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 24162 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 24223 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 24284 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 24345 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 24406 29 100.0 32 ............................. GCCGACATGCTTGGAGAAATAAGCGAAGGGCT 24467 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 24528 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 24589 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 24650 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 24711 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 24772 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 24833 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 24894 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 24955 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 25016 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 25077 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 25138 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 25199 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 25261 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GCGCTATTCCTACCCCCACACCCCGATCCCCCGTGTTCCCCGCGCTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //