Array 1 5416-6908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIN01000120.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5416 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5477 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5538 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5599 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5660 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5721 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5782 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5843 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5904 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5965 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6026 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6087 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6148 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6209 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6270 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6331 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6393 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6454 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6515 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6576 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6637 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6698 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6759 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6820 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6881 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8950-10914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIN01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8950 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 9011 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 9072 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 9133 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 9194 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 9255 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9316 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9378 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9439 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9500 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9561 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9622 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9683 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9744 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9805 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9866 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9927 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9988 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 10049 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 10110 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 10171 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 10233 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10336 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10397 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10458 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10519 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10580 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10641 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10702 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10763 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10824 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10885 29 96.6 0 A............................ | A [10911] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //