Array 1 1192-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNOK01000122.1 Neisseria meningitidis strain S00-1282 12-160_contig157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1191 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 1125 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 1059 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 993 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 927 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 861 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 795 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 729 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 663 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 597 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 531 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 465 36 97.2 30 ............A....................... AAGCATTGACGATATTTGTGTGGCGTTGCA 399 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 333 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCATA 267 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 201 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 135 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 69 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : TATGATGCCGAAACCCTGCAAGCCCTGAATAGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 16154-15656 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNOK01000188.1 Neisseria meningitidis strain S00-1282 12-160_contig269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16153 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 16087 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 16021 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 15955 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 15889 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 15823 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTCCTTTACA 15757 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 15691 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AATGCCTGATGCCGTGTCGTGCGACACCTGAG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //