Array 1 72473-72952 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPHG01000027.1 Amycolatopsis sp. CA-128772 Contig0000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 72473 37 100.0 45 ..................................... AAGATGGAGCAGATGATCAGACGGCCACGGCCAGCTTCTGCTGGC 72555 37 91.9 38 ...T..G..G........................... CACGGCAGTCACGACCAGCCGGCGGAAAAATCGCACTC 72630 37 100.0 35 ..................................... GCCATGACTCCCTTGTCCCGGAACTTGAAGGGCTT 72702 36 89.2 27 .......................A.-........G.A TCGGAGCCGGTGTTCGTGCCGATGTCC Deletion [72765] 72765 37 100.0 35 ..................................... AGCTGAAAGTGCATGTAGTCGAAGATCGTGTTGCG 72837 37 97.3 41 ..........T.......................... CATTCCGGCTGGCCGTCCGGGAAGTTCCCGAAGAACCCGTA 72915 36 89.2 0 .C..T..T.......................-..... | CA [72930] ========== ====== ====== ====== ===================================== ============================================= ================== 7 37 95.4 37 GTGCCGACCACAGTCACGCCGAAGGGCGTATAGAAAC # Left flank : CCGAAAGACCGCCTCAAAGCCTCCGTCAACCTCCACCTCGACAACCAGGCCGCACGCCGCGCATCCCCGGTCTGGCTCACCCCCGTCCGGCTCGGCGACACCGACCAGTACGCCGTGTTCACCCACATCTTCTACGCCGACCTCGCCCCCACCGAGCAGGACGCGGCCCTCCGGCTCGACGGAGGACCGGCACCTCGCCCCCTGACCCTGCCTGCCACCGCCACCGCGACCGCGATCTGGGACGCGTGGCTCGACGGCGACCCCCGCCGATGAGACACGCTCATCGGCTCAAGGTTGCTCGTGCGGCGGAGGAGACCTACGTGACTATGCCGAACGGGCGATGGGCCCGTGAAGATCCACAAGCCATATCGCGTGCACGTCTCCCACGTGCGAAAACAGGCCATGCGAGCCCTGGTGACGATCATGCGGAACGGGAAATCGGAACTGCCGTGCAGCACCCGAGTATTTGCGCTGATTAGAGCCACCCTCAACCAGGTAGA # Right flank : CGCGGTGTTCGGACGAGGCCGGTGGATCGTGCAGGGGTTGTCGGGCAGCGAGTGTCGGCGTTTTCGGGTAACGATTCGATGGCGGGTTGGGTGGTGGTGAACCTGGGGCGGGTCGCTGCCGACTTCAGCGGTGTTCGCGTGACGTGGCCTGGCGCGTTCGGTGGTCGGGAGTGGAGGTGGTGATGCCGAGTTTGTGGGAGATGCCGGTTCCCGGGGGTGTGCTTGATCGGCGCCGGTTGCACGGGTTGCTGGCGTCGTGGCTGGACTCCGACCATCGGGCTGACCGGAAGGCGTGGTCGTGGAAGGCGACGACTACGGGGATCGAGATCGGTGTGCTCGACGACAAAGTGGTGGAGCGGTTGCTGGCGGGGGCTGGCCGGCGGGTGCGGCAGGTCGCTGCCGTGGCGTGGTCGGAGGTGGCGGCCGGTCCCGGGCGTGCGTGGGCTGTGGAATTCGTGAGCCCGGTGACGTTCCGCCGGGGCAACCGTTTGCTGCCGTGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGACCACAGTCACGCCGAAGGGCGTATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 76136-76393 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPHG01000027.1 Amycolatopsis sp. CA-128772 Contig0000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 76136 37 100.0 32 ..................................... GCCGATCAGGGGCTTGCTTGCACTCAGTTGGA 76205 37 91.9 38 ...........G...........AA............ AGCACCCCGCAGTTCCACCGGACCTTGCCCATGCTGCG 76280 37 97.3 40 ..A.................................. GCGCAAGCGGCGCAGCCCATGTGGTCGGCCAAAATGATCG 76357 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 97.3 37 GTGCCAGCTCTACTCACGCCGAAGGGCGTATAGAAAC # Left flank : CGAGGGCACCGTGGCCGAGCTGAGGGGACTGTCATGGCGCTGACAACGCTGGTCTGCTATGACATCTCCCGGGACGCGGTGCGTGCCCGGGTCGCGGGCTACCTGCAGCACTGGGGCGACCGCATCCAGCGCAGCGTGTTCGTCTGCTCCATCGACACCGCCGACCTCCCCGATTTCCGGGAGCGGCTCGCCGGAATGATCAACCCCAGCACCGACGCGGTGCACCTGGTGCCCCTGTGTGCCACGTGCTGGTCGAAAACCGTCGTACTTGGCCAAGCCGACCTCGAACCCGACCGTCCGTACTGGATCGCGCTATGACCCGCCTTAGCCCGAAGGGGGGAAGGTCAACTGAAGATCGACATTATGTCTCGCGTGCACGCCCCGGACCAGCGCAAACGGCACCAACACCGCCCGATGCCGATCTTCTTGGGGCCGCGCACAGCGGTGCCGTGCACGGCACCGCCGTTCGAGCTGGTCAGAGGCGTGTCCTACCGGGTAGG # Right flank : CCATCGTTCGGCAGGTGGTGGATGGGTCATCACGCCGCAATGTGGTCAACGGTCACAGCCCAACCGGGTCCACAAGCAGAGGGTGGTGTGGAGCCGGTAGCGGTGGCTGTACATCTGGATCATGCCGTAGTGGGTGAGGTAGTGGCTGCGCAGGCACAGCACCGGGCTGCTGCGCGCGCGGCGAACGGGCAGGAGGTCACCGAATTCGCCACGGTCGCCGGAGCGCGGGCCACCCACGAGAGGTTGGCTGGTCATCGCGGCGGCTACCGGAAGTCTCGGGACGGGCCCGTGGTCATGGCCAGGTCGAGATGTTCCAGCCGGTCGGCGACCAGGGTGACCACGCCCTCGCCGGCCTGCACTTGGCCTCGTATGAGCAGTGCAGCGCTGGTGCGGGCGACGAGCCGCTGCCGTTGCCAGAGGCCCGGCGACACCAGGACGTTGGCCATGCCGGTCTCGTCTTCGAGGTTGAGGAACGTGATCCCGCCTGCGGTCGCGGGCCG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCAGCTCTACTCACGCCGAAGGGCGTATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 68739-69009 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPHG01000009.1 Amycolatopsis sp. CA-128772 Contig0000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68739 28 100.0 32 ............................ CCCTGCAGCGACTCGCGCAGCTCCTGCGCCTG 68799 28 100.0 33 ............................ GGATTGGGCTCCCCGGTCGAGACCGAGGCCGAA 68860 28 100.0 33 ............................ CATCGCCTTCACATACACCCAGTACGTCACGAT 68921 28 92.9 33 ..........................GG CATGGAACCGTTCAACTGCGACCTCACCGGCTC 68982 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 33 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : CCCGAAGCTCATCCGTCGACTCGACCGCTCCTCACCTACTGCGCTCAGTCGCTGACCGCGGCGCCGACATCGGCCGGCCCAGCAGCTGACTCGCCCCTACCCACGGCAGCAAAAAGGCCCAGGTCGTCGACCTGGGCCTTGCGCTCCCCCGCTTGGACTCGAACCAAGAACCCTCAGGTTAACTGGAGGCTCTGGACGCGGCTCGACATCAGTCGATCCAGCTGGGATGTTCGCATTCGCTCATGCCGTGATTCGATGTCAATCGACGTCGATCGTCGCCGTTTATGGAGCATGAATGTTCCCTCGTTCGTGATCTCAGACGTGGATGGAGGACCTACAGGGCACGTGGCCATCACGACGCATCGGGAACGCGTCGCCGGGACGCATCAATTTAGTCAGAGGTCGCGCCGTCGACATCGGCCGAAGACAGTCTCGAGATGTTCAAGACGAAGGTGAACAAAAAACACCGTTACGACTGGTAACGTGCCAGGTCAGCAAGC # Right flank : CCCGTGCCGCGGCCGAACCGGCGAGAAAGGCGAGGTCGTCGATGTTGAGGAGGCGTGAGCGGCGGTGCCGAGCAAAACGGTCCGCCGCGATCTGGTGACACGCATTTGGGCAACCTTCGACGGTAGCAGTCCGGTCCGCAAGGTTGCGGAATCGCACCGAGGGGTCCCTGCCACTGCGGGTCGTTGGCTGGGCCGGTCCGTGGTTTGGCCGGCATGCGCTTCCGGCGCCATGGCCGGTCCCGGCATCGCGCCCGAATTCAGGTGATCTTGGAACTCGATACTGTCGAAGACAGTGAGGTCACCATGCTGTTGAAGACCGCCGTGGGCACCGAGTCCAGCTGGATTGTCAAAGGCATCTGCCGGGGCGATGCACATATAGCCGCCGTCGGTGGTTCGGGCATTGGCGGGTAGGCCGGGTACTGGGGTAGTGCGACAGAGCGTCACTCTACGGAGCGAGTCGGTAATATCTCTACCCTTGAGAGGTGTGGTGGGCGGATCGA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //