Array 1 78024-77695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBVS010000007.1 Erwinia amylovora LA635 chromosome VII, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78023 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 77963 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 77903 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 77843 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 77783 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 77722 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88920-87487 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBVS010000007.1 Erwinia amylovora LA635 chromosome VII, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88919 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 88858 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 88797 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 88736 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 88675 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 88614 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 88553 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 88492 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 88431 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 88370 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 88309 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 88248 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 88187 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 88126 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 88064 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 88003 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 87942 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 87881 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 87820 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 87759 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 87698 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 87637 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 87576 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 87515 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 101990-99827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBVS010000007.1 Erwinia amylovora LA635 chromosome VII, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101989 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 101928 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 101867 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 101806 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 101745 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 101684 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 101623 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 101562 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 101501 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 101440 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 101379 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 101318 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 101257 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 101196 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 101135 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 101074 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 101013 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 100952 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 100891 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 100830 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 100769 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 100708 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 100647 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 100586 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 100525 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 100464 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 100403 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 100342 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 100281 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 100220 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 100159 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 100098 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 100037 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 99976 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 99915 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 99854 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //