Array 1 35881-35051 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXZH01000003.1 Vagococcus humatus strain JCM 31581 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 35880 36 100.0 30 .................................... CAAGCAGCTGCTCCAAACTTTATGGCAGGT 35814 36 100.0 30 .................................... TAAGAGTTGCGTTTGTTCCCCTAACTGTAC 35748 36 100.0 30 .................................... AATAATCGCTATTAATGTTGTGTTAGCCTT 35682 36 100.0 30 .................................... ATAAAGTTTTATTTCTTCTTGTAAATTCTA 35616 36 100.0 30 .................................... TGAGAGCAGCTATGAAGATGATGAGTCAAT 35550 36 100.0 30 .................................... GGCTTGTCTTATGTTCAAGAAGCAACTAGC 35484 36 100.0 30 .................................... ATCACATTCTGGTCCAAACATATACAGTGT 35418 36 100.0 30 .................................... AAGAGTTTTGGTCGATGGATATGTATGATA 35352 36 100.0 30 .................................... AATAGATTTTTATGAGTATTCTCGTGATGA 35286 36 100.0 30 .................................... TAAAAAAAGAATTTATAGCTATTATAGCAT 35220 36 100.0 30 .................................... TACTTCTTCCACATCAGAATTTGCACTACA 35154 36 100.0 31 .................................... AGAGTTCGAGTTTGATCCAGAATTTAAATTA 35087 35 86.1 0 ........................A..-.AA....A | AA [35065] ========== ====== ====== ====== ==================================== =============================== ================== 13 36 98.9 30 GTTTTAGAGCTATGTTGTTTTGAATGCCTCCAAAAC # Left flank : ATTGATCAATTAACAGATAAAATCAGTAACATGATTGGAGATGAATTGCTTAATCATGAACTAGATTTAGAAAAAGATGAGATTACGATTTTAGAGTTGTTTAAAGCATTGGGTGTCAAAATTGAAACGCAAAGTGATACTATCTATGAAAAAATGTTAGAGATTGTCCAAGTATACAAGTATCTAAAAAGAAAAAAATTGTTAGTGTTTATCAATACCTATGCTTATCTAACTGGAGAGGAAATGAAAGAGTTACAGCAATATATCTCTCTTAATCAGATAGATGTTTTATTTTTAGAACCGAGAAAAAGAGAGGGAATTCCTCAGACAGTAGTGGATAGAGATTTTTATATTTATACGGAAAATATGGTATAATATAAGTGACCAATGATCTTTGAAAAATAAATAATTAAATAGATATTGAGGCATTTAAAACTGGATTCTTGCTAGGATGAATAGCGCGATTACGGGATTTTGTTGGATGAAAAAAATCTGACGAG # Right flank : GTGCAAGTCATGTAAGATCAAAAAAATATATCTAATTAAATTCAAAAGGACACAGAAATTTCTGTGTCCTTTTTTTGACGATGCTAATGTTATTTAATTTTAGAGCTATTTCAAGAGTAACTAAACGAAAAATGTTTATTTTAACACTAAAAACTAAAAAAGTTGGAATGTTAAAAAAGAAAATAAATAGGAAGATGAATATATCTGAAGATTACTTTTGTTATACCAAAGTTTACAATTTGTTAAAATAACAATAGAATTAAGTACGAAAAGTGGTTTATTTGTCTAAAAAATGTACTCTTATTGTTATTCATATCAGTACCATTCTGGTGAAATCATGGTATTATAGATAAGGAAGTCATTTTATTTATTAGGTTCGTGTTAAAAAATGGAGTAAGGAGATGTGCACATGGAGAATTTATTTGCAATAACACCTCTGACTAAGGAATTTTTGACTCATCTCAATCAAGATGAGTTTTTCAAACGGATTGAACAAGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 861791-862618 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXZH01000001.1 Vagococcus humatus strain JCM 31581 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 861791 36 100.0 30 .................................... GAAAGAAATGATGATTTAAATCGATTTAAA 861857 36 100.0 30 .................................... ATTGCTTATTCGGAAGATGAAGAAAATGGA 861923 36 100.0 30 .................................... GCAACACTTAACATAATACGCCCATGCAAG 861989 36 100.0 30 .................................... TTATTTCACCTCCTTTTTAACTAAGTCACT 862055 36 100.0 30 .................................... GCAAACTATGCCTTTGAAAAATTCAAAGAT 862121 36 100.0 30 .................................... TCGCTCGTATTCGCATTCGTCTGTGGGCTT 862187 36 100.0 30 .................................... ATGGACGCAATTAAGTTAACTTCATTCTCT 862253 36 100.0 30 .................................... GCGTAAAAAGTCTTAGTTGCTTGTCCTCCG 862319 36 100.0 30 .................................... AAAGTCTTGATAGATTTTTAGCAGCTCTAC 862385 36 100.0 30 .................................... TATATGTCAAACTTTGATTTTTTTGTTTAG 862451 36 97.2 30 ....................A............... ATAAACATCACGACCACCAATTTTTATCCC 862517 36 97.2 30 ....................A............... ACTGGACAATTTATGATACATAATGCAGCG 862583 36 80.6 0 A.....T..T...........AT.C.......T... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.1 30 GTTTTAGAACCATTCTATTTGTCATAGTATTAAAAC # Left flank : TGATTGGTTCTGGTACAAATGCTTATACCGCTTCAAAAGGAGCAACCCGTGCGATTTCTAAAGCAGCTGCAGTTGATTTAGCTCCTTTTAATATTCGAGTGAACTCAGTGTATCCTGGAGTCATCCAAACGCCTATGTCAGAAGCAGTTAGTGAGATGAAAGAAGCTCTTAACTACTTAATTAGCCATACTCCTTTAGGTCGTTTAGGTAAACCTGAAGAAGTGGCGAACACCCTTCTTTTCCTAGCATCTGATGAAGCTTCTTATATTACTGGAGCGGAAGTCGTGATTGACGGAGGCTATTCAGCTAAATAATTAGACTAATTAAAGAAAATAACCCACGACTCTTCAAAATTAGCTTTAAAAATTTATTTTTTAGACTCACTGCACAGTATTTTTTAAAAGGTCTATTATTACATGAATAAAGAAAAATAATATGATAAAATATCATTAGAGAGCTGATAACCTTATAAATTTATTAACTAAAATTTATTTGCCGAG # Right flank : CCTTGTATTACCACTTGTATTACCGAACTTTTTACTTACTTATAGTATTAAACTTTAAAACTATCTCATGTTTAAACCAATAAAAATTAAGGAGTGATCAATTATAGATATAGATAGACTTTTCGAAAAAGTTATTAAAAATCAGTATACAGAAACACTTTATGCTCATCAAAACAAAGCACAACACGAACTCTTAAAAGACCATGCGGCATTATCCTTACAAATTTTTAGACAACAACTAAATCAAGGAACTATTAATCACATAGCTAACAAGCTTCAACTAGATGAAAATATAGTGACTTATCTGTTTGAGAGTGCAGTGTACATGCATGATTTTGGCAAAGCCACTCCCTATTTTCAATATTACAAAATGGCACAAGTTGCGAAAAAACCACATGGAAGTGGTCATTTGACTTATCATTCTAGATTATCAGCTATCTATTATTTTGATCAAATGTCGCTTTACATTAATGAACATGTGCCAAACGGGGAAATGTTTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACCATTCTATTTGTCATAGTATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //