Array 1 268271-267773 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811169.1 Streptococcus sp. HMSC071H03 Scaffold778, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 268270 36 88.9 30 NNNN................................ TATTGAGCGTAAACAGCAAGTAGAAGCCAA 268204 36 100.0 30 .................................... AATACGCAATGGAATGCGATGGTTTGGGAC 268138 36 100.0 30 .................................... ATCTAAGTATAGACTATCTGTATCGCAGTA 268072 36 100.0 30 .................................... GAAAGTTACAGCAAATACTTTTGGAAATAA 268006 36 97.2 30 ..C................................. GAAAGTTACAGCAAATACTTTTGGAAATAA 267940 36 97.2 30 ..........................C......... GAGGTGTTGGGATAATGGGTGTGGATACAG 267874 36 100.0 30 .................................... TTTTACATTTCTATAACAAATCGCGGTGAT 267808 35 77.8 0 ..................AA-..C.T.G.A.....T | C [267777] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 95.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : TAAGTAACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTACTCTCAAGATTTAAGTAACTGTAAAACTGACTCAGTGACGATCTCAAAGCCCACAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACAATCTATAACAAGCTAGAACAGCCAAGACAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACAGTTGTGAAAATAAGAGAGTATCTAATTCAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACATAGTTAATGGTAAAAATTCCATATAACGAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TACAGAACTCATTATTGGGCATTGTTTAATGTAAAAGAAATTTAATGAAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGTTGAAATGGTTTATAATGAAAAGTAACAAGTATATTAGGAGGTCGTCTAATGGAGAGAAAAATTAAAAAATCAGTAGTTGCGACCGGTTTAGCAGCAACCACTATTATTTCGGGCAGTTTATCACATCAAGTAAATGCTGAAGAAGTAAAAACACAATCTACTGAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGATACAAGCCGATGCTGCAAAGGTTCAAACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTCAAAGGAGATGTAAATACTTCAAAGGACGCGGTGGCAGATAGCGAAAAAGCTGTTGCAAATGCTGAGGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.73%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 268598-268364 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811169.1 Streptococcus sp. HMSC071H03 Scaffold778, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 268597 36 100.0 30 .................................... AATCTATAACAAGCTAGAACAGCCAAGACA 268531 36 100.0 30 .................................... AGTTGTGAAAATAAGAGAGTATCTAATTCA 268465 36 100.0 30 .................................... ATAGTTAATGGTAAAAATTCCATATAACGA 268399 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : TTTAAGTAACTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACTCTCAAGATTTAAGTAACTGTAAAACTTTGAGCCATATTTTCCGTTGCGATAATGCGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACCTTTTTCATGTTCATCTTTGTTTAAAAAGTGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACAGTAAATCATTGTCTGTGATATATGTTTTTGTTTTTGTACTCTCAAGATTTAAGTAACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTACTCTCAAGATTTAAGTAACTGTAAAACTGACTCAGTGACGATCTCAAAGCCCACAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTACTCTCAAGATTTAAGTAACTGTAAAACTATTGAGCGTAAACAGCAAGTAGAAGCCAAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACAATACGCAATGGAATGCGATGGTTTGGGACGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACATCTAAGTATAGACTATCTGTATCGCAGTAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACGAAAGTTACAGCAAATACTTTTGGAAATAAGTCTTTGTACTCTCAAGATTTAAGTAACTGTAAAACGAAAGTTACAGCAAATACTTTTGGAAATAAGTTTTTGTACTCTCAAGATTTAAGTACCTGTAAAACGAGGTGTTGGGATAATGGGTGTGGATACAGGTTTTTGTACT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 268989-268755 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811169.1 Streptococcus sp. HMSC071H03 Scaffold778, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 268988 36 86.1 30 NNNNN............................... TTTGAGCCATATTTTCCGTTGCGATAATGC 268922 36 100.0 30 .................................... CTTTTTCATGTTCATCTTTGTTTAAAAAGT 268856 36 100.0 30 .................................... AGTAAATCATTGTCTGTGATATATGTTTTT 268790 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : GAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTACTCTCAAGATTTAAGTAACTGTAAAACTGACTCAGTGACGATCTCAAAGCCCACAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACAATCTATAACAAGCTAGAACAGCCAAGACAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACAGTTGTGAAAATAAGAGAGTATCTAATTCAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACATAGTTAATGGTAAAAATTCCATATAACGAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTACTCTCAA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 150213-150448 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811145.1 Streptococcus sp. HMSC071H03 Scaffold136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 150213 36 91.7 30 A.....TT............................ CGTTCTGAACGCAAGCAACTTGCTAAAGAG AC [150216] 150281 36 97.2 30 ......C............................. AAAATAAAGTTGTATACGACAAATACCAAG 150347 36 100.0 30 .................................... CATCATGAGACAGTTACCTAAAGCTATTAG 150413 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AAAGACTTCTAGCACATTGATTTCCAAGTCTGTTGCCAAAGACGGAGGTAAGACAGATTACCGCGGTCAAGTCCGTTTTGGCAAGAACAGTGCTGGTTCAAAGTCTCACATTGAGTGCGACACGATTCTTATGGATGGTGAATCCAGCTCAGATACCATTCCGTTTAATGAAATTCACAATTCAAATGTTGCACTTGAACACGAAGCTAAGGTTTCTAAGGTTTCAGAAGACCAGCTTTATTACCTTATGAGCCGCGGTATTAGCGAAGAAGAAGCAACTGCCATGATTATCAATGGCTTTATGGAGCCAATTACCAAAGAGCTCCCAATGGAGTACGCAGTTGAGCTCAACCAGCTCATCAACATGAGTATGGAAGGTTCTGTAGGATAAAAATAAAAACAGTCGTGAGGCTGTTTTTTTGTGCTCCTAATTGAAATAAGAGAAAGAAAAAAGCACCGAATCGGTGCTCACTTTTCAAGTTGGATACGGACAAAGCCTT # Right flank : CACAATACACTTTAATCATAGGACTTGCAAAATTTTTCAATCGTGCTATAATACTTTTTAGAGACATATCGCTGACTGGAATCTTTTAGAGAGCGCGTGGAGCTGAAAATCGCGCAGAGGAAGGCAGTTGAGACTACTCTGTTAGCTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTCGGGATGTCGTTTTTTTTATTTTGTTGAAGGGAGAAAAAGTTATGCTCTATATGATTGGCGGATCACCCTGCAGCGGGAAATCAACGCTCGCTTCCCTTCTTGCTCGGAAGTACGATTTGCTTCATATCAAGCTGGATGATTTGGTAGACGAGATGATGAGTCAAGCAAGTGTAGACTCACGACCGATTTGCCTTCTTAGACAGGACAGAAATCCGGAACAAATCTGGATGAGAAATCCAGAAGAGAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 238189-237221 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811162.1 Streptococcus sp. HMSC071H03 Scaffold437, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 238188 37 100.0 32 ..................................... ACAATTAGTAGAACATCTTGTAAACTGTTTTC 238119 37 100.0 34 ..................................... TGTCTGTCCTACCAGTCAATGAAAGCCCTACTTT 238048 37 100.0 35 ..................................... AAGAAATTCTAATACGGTAACAGTGGTAACGCCAG 237976 37 100.0 35 ..................................... CAGGTTTTCATACCCTCAACAATGGCAGGTAATGC 237904 37 100.0 35 ..................................... AATATAATGAATCAATTTTCCCGTATTCTTATCTT 237832 37 100.0 37 ..................................... TTTGATTGTCGTTTGGAACTAATCGTTCTAAGTTTTT 237758 37 100.0 34 ..................................... TGTCTGTCCTACCAGTCAATGAAAGCCCTACTTT 237687 37 100.0 35 ..................................... AATATAATGAATCAATTTTCCCGTATTCTTATCTT 237615 37 100.0 37 ..................................... CTATAAGGTCTAATACAGTCATAAGATGTTTTAAAAT 237541 37 100.0 32 ..................................... ACAATTAGTAGAACATCTTGTAAACTGTTTTC 237472 37 100.0 35 ..................................... AATATAATGAATCAATTTTCCCGTATTCTTATCTT 237400 37 100.0 34 ..................................... TAAGGACACGTGGTTCAATAAATGATAGCATATT 237329 37 100.0 36 ..................................... TCTCTTTACCTTGCAACTTACGGACTTTAATATCCG 237256 36 91.9 0 ...............................A-...T | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 99.4 35 GTTAGTAACCCATATTACCTCGAGAGGGGACGGAAAC # Left flank : CAAGCTAAACCTGTCGCACCCAGATGCCGATGCTATCATTGACTATCTGGAGCATGAGATGAAGAAGGAGCGTGGGAGTGAAAGCAAGGAAAGAGTCTATAACAAGACTTCTACTTTGAACCTTTTGTCTTTTAGCAATATTTTGGAATTTTATCAGGCGGAAGAGTCTTTACTGGAAAGTATCAAATTAGTGAAGAGTTTCAACGGGGAAAGAAATCGTCTAGCGCATGGTCTCGCTGAAATCGATAAAAAGGCAATTAGCTCAAAAAGATTGCGCGCCTTGTTGGGAACATTAAAGGATATCCTCCAGTCCAACTATGATATTAGAGAAGAACGATTCTCCTATTACGATGTTAAGAATGAGGAGTTACTTAAACTGCTCAAGTAGCTCTCAGTTCTTCCTTTTTGGTTCAAAATATGTTATAATCAAAGAAGTTTCCACTTTTGGGCTGTTAAAACAAGATATGGTGGTTTTCTGGTATTTATGTACAAAATATAGG # Right flank : AGATAAAAATCGCTCTAGTGGGCGCTTTTTGTTATTTTGAAGTTCAAAAGTTCTTGAGGCAAAATGTCTCTTAGAAGTTTGAATTGCAAAAGAAAACAAAGGCTGTCTATTTTTTGTAAAAAACCCGAAATTTTAGTATAATGAAAAGACTAGAAGTATGAGGTAATGCCTATGGAAATGAAGCAAATTAGTGATACAACGATTAAAATCACAATAAAATTAGAGGATTTAGAGGAACGTGGGATGGAAATGGCAGATTTTCTAGTCCCACAAGAAAAAACAGAAGAGTTTTTCTATGCGATTTTAGATGAGTTGGAAATGCCAGAGAGCTTTTTAGATAGCGGCATGCTCAGTTTTCGTGTGACACCAAAGCCCGACCGATTGGATGTCTTTGTCACCAAGTCTAAGATTGATAAGAATCTGAACTTCGATGATTTGGCAGATTTGCCAGATGTAGAAGAGCTGTCTCAAATGTCTCCTGATGAATTTTTAAAGACATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCCATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 248338-248082 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811162.1 Streptococcus sp. HMSC071H03 Scaffold437, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 248337 37 100.0 35 ..................................... GATGGCTACCTTTGTCCTTATGGACAGAGACAGCG 248265 37 100.0 38 ..................................... CTATCGATTTTGTTTCTAAATTAACAAAAATATACAAG 248190 37 97.3 35 .......................A............. TTTATGTGTGTAACGTTTATTAATTCTAAAATTGA 248118 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 99.3 36 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Left flank : TTGATTCGTTGTTTTGAAACGGAGAATCATAAGGAATTTTTAAGCGGGTATACGGGAGAATAATAATGGGATTTTTTTACAACTTAGACGAAGAGGCGAAAAACTTTGCGCAGAAAAAAACGGTATTTTGCCTTGTTATTTATGATATTATTAGTAATAAGCGACGTCTCAAACTTTCTAAATTGCTGGAAGGATATGGCATGCGAGTCCAACGTTCTTGTTTTGAGATTGATGTTGAAAAAACAAACTATCATCACCTTCTTCAAGATTTAGAAAAATTTTATTGTCAGGAGGAGGGAGACAATATAATTGTTTATGTTGGTGATAAGAAAGAGACAGTCATCTTCAACTCTTATGAAGGAGCAGAAATTCTGGAAGATATTTTGTTTTTCTGAAACTTTTAATTTAATGAAAAATGTGGTAAAATATAGATATGTTTCCAAATCTTGAATAAAACAAGATTTAGGGGTCATTCTCTGAAGCTTGATACAAGATATAGG # Right flank : TTTTCTTTTGAGGGTCAATATAGCGTACCATTATTAGTTAATAACCCATGTTACCTCGAGAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACCCATGTTACCTCGAGAGGGGACGGAAACACAGGAAAGGCGATGTAGAAAGGCCAACCGACAACAGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACTTGAAATAGCTGTTGTATTTGCATACGGCATATTTTCAGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACGATGGCTACCTTTGTCCTTATGGACAGAGACAGTGGTTAATAACCCATGTTACCTGGAGAGGGGACGGAAACACGTTTATTTTATCAATAATAATCATTGAGTTACGGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACACGTTTATTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //