Array 1 790380-788670 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 790379 37 100.0 37 ..................................... CTTGGGGTATTCTTCGTATAATTCTGGTGATGGGTAA 790305 37 100.0 36 ..................................... CGATAAATATGATTTTATTAGAACAAAGGAAAAAAA 790232 37 100.0 33 ..................................... GAGCAGTTGCAGACGCGATGGAACCTTTACCTA 790162 37 100.0 36 ..................................... CTTCATACTGTGCAAGAAGCGATCGCAGTTCATCAA 790089 37 100.0 36 ..................................... AATTTACGATAAATCAAGCAAATGTAAAAGTTTACT 790016 37 100.0 35 ..................................... TCATCCTTTGTCCGAAGCGTGACATATACCCTTTG 789944 37 100.0 36 ..................................... CAATGCTACCTATAGTAATACCTGTTCTATCATCGT 789871 37 100.0 37 ..................................... TATGGACTGAATATATAGCCAATATATGTTCTCAAAA 789797 37 100.0 38 ..................................... AATGATTTGTATTATTGTCCTGACTTAGAAAAATCTAT 789722 37 100.0 36 ..................................... TCAGGAAAAGCGGTTGCTAAATCTATATCGTGAACT 789649 37 100.0 36 ..................................... GGTCAACAGCTTTGCGAATGAGGAGGGATCGGGATT 789576 37 100.0 37 ..................................... TTACTGTACCCAGTCACCCCGGATTTCCCAAAACCGA 789502 37 100.0 35 ..................................... CTGAGAGTAACCCCTTGGGTAAAAGCTGCTGATGC 789430 37 100.0 37 ..................................... TACTTCAGCATCAAGTGTAGAGCAAGCCTTTATGGGA 789356 37 100.0 38 ..................................... TGCGATGCATTCGGTTTGCCAGGGAAGCTAACGATAGA 789281 37 100.0 36 ..................................... GTGCCGGGATTCTAAAGCAACAAAGGGATTATGCAA 789208 37 100.0 36 ..................................... CAAACATAGTTGAAATACTTGCACCAAAACTTAAGA 789135 37 100.0 31 ..................................... TTGATTTAAGGCAAGTTGGCACATGTCAGCA 789067 37 100.0 36 ..................................... ATTGAATACGATGATTTCCCAAGCATTGAAATTGTA 788994 37 100.0 38 ..................................... ATTTCTGATATCTCAGAAGAGATGAAAAAACACATTTT 788919 37 100.0 33 ..................................... AAGTAGAGCTTATCTGCGGACATTTGGGCAGAA 788849 37 100.0 34 ..................................... TTTGAAGAAGTTCTCCCAAAGCTACGCGCTAATG 788778 37 100.0 35 ..................................... TATACTGTTCTTTGTCTGTGAGCTTGGCTTTTTCA 788706 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 100.0 36 GTTTCAACTTCCTACTACCCCGCAAGGGGATTGAAAC # Left flank : ATTTCATTGATAAAAAACCCTAATCGTTTCTTGCGGTCTTTGATAATAGAAGGTCGAAAGACATCATCTGGATCGAATCCAGTCAAACGTCTCAATTCTCCCTTGCTAATTTCCAAGCCTATTAAGTCCGGCTGCACAGCTGGATACTCCTATGAAAGTGCGAATTGCGTCTTTATACCAATTCTATGTGAGGTTTAGCTTGATTCACTTCAGGGCTACTCATGAATTGCCGTTACATATAGTTGAGAAAACCTCGACAATCGAGAACAATGATTATATAATCATGTAATCAGCTTGATGTTTGGCAGGGCGAAGCGGGAGTAAAATCCCTGGAGTGCCGCCAAAATCGCCAGAACCTTGATAAATCAATAATTACAGCGTTTCGATAGTTTGGGTAAATGCAAGTATTTTGCAATAAGTGCGGCTGAAAATCATCCAAATTTCTCCCCCGCCAAAAACCCTCACAGGAACCTTGCTCAGTAGCAGTTTCAGAGGGTAGG # Right flank : ACGTAAAACCGCCATTTCAGCCTATGCAACAACAGGTTTCAATGATGTCCAGTTAATTAGTTATAATTCCCGCAATCATTGCACCCCACCCCCAACCCCTCCCCGTTGACGGGGAGGGGAGACAAAGCATAGCTTTGGCGGGGTGGGGTTCTTCGGTTTTAATAAGTAATCAAGCGGATATGATATAGCATTTCCCAGTAAGCGCCAAGTACATATGATAACCCCACCCCCAACCCCTCCCCGTTGACGGGGAGGGGAGACAAAGCATAGCTTTGGCGGGGTGGGGTTCTTCGGTTTTAATAAGTAATCAAGCGGATATGATATAGCATTTCCCAGTAAGCGCCAAGTACATATGATAACCCCACCCCCAACCCCTCCCCGTTGACGGGGAGGGGAGACAAAGCATAGCTTTGGCGGGGTGGGGTTCTTCGGTTTTAATAAGTAATCAAGCGAATATGATATCACCTTAAAAACATATCCTCCTGTAATTACTTCTCCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTCCTACTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 1819331-1818632 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1819330 37 100.0 37 ..................................... AAATCTTGCTTGAATGAAAGAAAAAAAAATGGTAAAT 1819256 37 100.0 38 ..................................... AGAAAATCTTCTGTCACCATGTTGTAGCTGCTTATCAA 1819181 37 100.0 39 ..................................... AACCGTTCACAACTACGTTAGGGATGGGTATTTCACCGT 1819105 37 100.0 35 ..................................... TGCGAATTGCCTTTTTGGTCTATAGATGTTGAAAA 1819033 37 100.0 35 ..................................... TTAGCGTGTACACTTGTTTCCATAAAATGCTTTGA 1818961 37 100.0 39 ..................................... CTGCAAAAACAAATTGCTGAAAACGAAAAGCGCATCCAG 1818885 37 100.0 36 ..................................... GGTTTATACTAGATATTTTGTTCAAGTATTTTTTAA 1818812 37 100.0 34 ..................................... TAAAAGCTCCCGAACAGTTGAAACCCTGGCTACT 1818741 37 100.0 36 ..................................... GCTTTTATTCGCTACTTTTTGATGACAGACTTTTAA 1818668 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 99.7 37 GTTTCAACTTCCTACTACCCCGCAAGGGGATTGAAAC # Left flank : TAGCTTAACTGTTCGCTTCCTTACCCGCCTAGGAATAAATTAAGCGGCTCATAGCTAAGGTCTACTGAAGTAGACTAAGATTTTTGGGGATATTCAGTCATCTATTAGATGACTTTAGCTATTAGCAAGGAACTTAAGTTCCTTGCGGGACATCACTATTACGTTAAGTTGACACCAATGACAGTTGTACGCCCCTACTAATCCATGTGTGGCAAAGATTATTTAAATTGGTATTACATTAGTTCATAGAAACTCGACAATCACTAACAATCATTATATGATTATGTAATCAGCTTGATGTTTGGCAGGGCGAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAATCAATAATTACAGCGTTTCAGTTGTGAGAGTAAATGCAAGTATTTTGCAATAACAGCGGCTGAAAATAACCAAAATTTCTCCCCCGCCAAAATCCCTTACAGGAACCTTGTTCTGTAACAGTTTCAGGCTAAAGA # Right flank : CAAACCATAAAACCAGCCCTGCAAAAAGCTTTTGGGTACGATAGCATTAATTAGTAACGCCAAAGTTTTAGGAACTTCCAAATAAAAAATATTCTACTGTTCACAATCATCAGTCAACATTCAGCAATTGAAATTTCCTAACTATTCTGTTTATTAAATACCTCTAAAATCTGCCGGCAAACTTGCTTAAGCTTATCCCCCACTTCACGAGAAGGCAAAGATTCGCCGAAAAAGCTCCAGTTTTCCACCGTAGAAAGTCGCCAAGCCTCTCCGCGATGGTCAAATCCAGCCACCTCTATACCGATCGCCCGGCGTAAATTATTGATAGGATCTTGATAAAACCGGATTTGAATTAAAACACTGCGACTACGCCATGATTTACTGATCCCAGGAAAGTGAAAGCCAATATCTATGGAATCTGGATCAACCAATTCCCTTGTTTCTGGGTCATTCTTCCAAGGCTTGAGATCCGATTTGGCATCAGGAAACTCGAATTTGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTCCTACTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 2819430-2819020 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2819429 37 100.0 36 ..................................... GACTAATCGCGTGGTCAGGATTTTTGTAAAACCCAA 2819356 37 100.0 34 ..................................... ATCTTATAGGATTACTTAAATCTGTAATTTTAGC 2819285 37 100.0 34 ..................................... ATATCAGCTAAAAATTTTAACCGATATACAACAC 2819214 37 100.0 42 ..................................... AAACCCAATATAAAAGGCATCAAAACTTTGGGGCAACTTGGA 2819135 37 100.0 38 ..................................... AACGATTTTGAAATAATTCAAAGCTTGAATTACCGCAG 2819060 37 94.6 0 ................................T...A | T,TC,A [2819022,2819029,2819032] ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 99.1 37 CTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : GGCGGTACTGTTTTAATGTTTTCGACCAGGAAAACTGCACTGTCGCAAACTTGTTTGTGTGGTAATAAACACAAAAAATCACTATCTCAACGAGTGCATCATTGTTCAGTTTGTCGATTACGTATGCAACGTGATATTTTATCTGCTTACCTGAGTCGTTACGTCGATCCAAAAAAAGAAACTCTGTCAATCCAATCAGCCAAACATGGTTGGTTAGGGATGGAACAATCCCTGCTGCACGGTTGGCACAATGGTTCGGCAGTCGGAGTCTTGGCGGTTCCCGTCGAGTCCGAACTGCCGAACCCGGAGGGGTCAAATCAATCAGCCAGAACCAAGGCTAGTCCGAAGTCTCCTACCATTGGTGGGACAGAGTTGATGTGCAGTAATCCAATAGCTCGTCAGGAGTCGGAACCAGTTACGGTAAACGAAACTTACGCAGTAAGTTGGAACCCCCCGGATTTATCCGTGGGGTAGTTCAGACCCTCTTTCAGACTTCCGCA # Right flank : GTAAACCTTAAATTGTAGGGTGCGTTATAGCAACGCTTAACGCACCGAAAAAGATGGTGCCCTGCGGCTAATCTTCACTATCTCAAACTCCGAAATCCTTGCATAGCCGTAACACACCCTACTTAATATTTACTATACATTTTAAACAATACCAGGACTTAGGCAAGTATCATAAATTTATATTTGAGGCGGTCAAGAGTCAATAGTCCAAAAAAGCTTAAATTTTAGCTATTGACTATTGGTATAACTCCTCCCCGTTCACGGGGAAACAAAGCGTAGCTTTGGTGGGGTGGGGTTCTTCGGTTTTTATAAGTAATCAACCGGACATGATATTATTCCACATACATGAAAAAGCCCTTAAAAATAGCGAAAGACAATTATCTTTCTAATTTTTAAGGGCAGTAAAAACCTAATTTTCTTTTTACAATCAGGTGCTAATTCAACAGTATAGTCTCTGCTTTGCTGCTGCGAAGATATTAAGAAGCTATTGCCACTTCTGC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 4 3381969-3382523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3381969 37 100.0 39 ..................................... GTGCGATCGCTGCGGTCGGGTATGGCTTTGCATTATTTC 3382045 37 100.0 35 ..................................... ACCAAAGCCTGGAGCTTGACCAAAAAACACCTGAT 3382117 37 100.0 36 ..................................... GTTTCTCAGTGGAACACTAACAAAGCCACACCTAGA 3382190 37 100.0 40 ..................................... AAAACGTCTAGAGGTTTTCCTCCCACTGTATACATATTAA 3382267 37 100.0 36 ..................................... TACAAAGGATCACGCCCAATATTATATTTTTCTTGT 3382340 37 100.0 35 ..................................... GTCATCAACCAACTCTTCTTGTGCTGAATTAATGC 3382412 37 97.3 38 ....A................................ ATTTCCTCTAAGAAAATCTGTGCATCGGGTTCGGTCGA 3382487 37 97.3 0 .................................G... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.3 37 GTTTCAACTTACTAACTCCCCTCACGGGGATTGAAAC # Left flank : AATTGTGGTGAAAAATCCGGGCTAAGCACCCTTTAGGGTGCAGTTAGCTTTCATCCCTGCCATGAATGCACAGGGTTTTCTGCATTTTCACTATAATATCAGCATTACCCCACCCGGCAAAAGCGCGATAGCGCAGTGGCTCCCCTTACTAAGGGGAGGGTTGGGGGTGGGGTAATTTTATGATCGGCAATTCAACGCACATCACAAGTGTTGAACCAGATATGATACTTCAGATTGAACGCCCGAAAACTACTCGACAATATTAGATACACATATTATCATTAGCTAATCAGCTTGATGTTTGGCATGGCGAAGCAAGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGATAAATAAATACTTACAGCGTTTAAACAATGCAAAAAGTTGCAAATAAATTGCAATAAAAGGGGCTGAAAATGACCAAAAATTTTCCCCTGCCAAAACCCTTTCTAGGAAGCTTGCTCAGTAATAGTTTCAGACTGAAGT # Right flank : CGAAAACCTAAGCTTCGTAGCATATTTCCGAAGCTTGCGTGAAATTAAGAATCAGTTTTTGTTGCTTTAGGACTAATATCATGTCCGGTTGATTAGAAGTCAATTGCAAGCGTTGCGAAGCAATGCCAGAGTCTTTGTGATTGCTTTGCTTCACTTCGTTGCGCTCGCAATGGCATATTATAAGTATTTTAGCGGACATGATATAACACTATAAATCTGATTAATACTACTAACGGTATAGGGTTAAGATTCTAGAATTAGCTATGGTGGCAGACATGTTTAAGATAGATATTTTGGCAAATTATGGCATCTCATAGTGATGGTAAATAAAAGGAGCGATCGCCCAAAAGAATTTCTACCTCCTGCCTCCTGCCGCAAAAGCCATAACTTTTGAACTTCATCCCCAGAAAAAATGTCTTAATTGCTAATTAGACTTTCGTCATCAACCATTAGTAATAATCTATTAGCAGTTTTTATTTATAAGGGCTAATTTCTCTAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTACTAACTCCCCTCACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 5 3785449-3785629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 3785449 37 100.0 35 ..................................... ATTTCTAGCCAGTTAGCTTATAGTCTGCATGGTGA 3785521 37 100.0 35 ..................................... ATCTAAGGCACAAGGGGAGACCCAGACTTGTGAGG 3785593 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 36 CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : TATTACCCAAATAGTTGAAGAGTTGATTGATACCTTGCCAGAACCAAAACAATCAAAAGCCACTGAGGCGTAAACGCCTTCAGGCAGCTTTCATCCCTTGCCTAAAGTACGGTGTTTGCGGCGCAATGCGCCTGTTCCTCAAGGGCTTTCAGCTAGCCATCCCTGTAAATATTTAGGTTCTGCCCTTCCTGGATACTCGCGTAACGGTCAGTTGCGCCTGGCACAGTATGCTGCTTACTGTAATGAAGCTCACCGTTTGGAGATTGTCAAAACAATTGTTATTGGTAAAATCCACAACCAACACAGTGTTTTATATCGCCACGACCAAAAAGACAATCCCCTCAAATCCCGCAAAATCGCCATAACCTTGATAAATCAATAGTTTCAGACTTTTGAAATGAACTTAGAGCCTCTTGTTCAATGCCGGAAACGGACTTTTAAACTAGCCCTGCCAAAACTGCTCCCAGGAATGGCTCTATAATTAGCTTCTGCCTGGCGGA # Right flank : CGAGAGTGTGTAGTAGAGTCTTGTGATTCACCATACACTTTCAAATAAATCATATTGCTGCTTACAGCCTGTTTACGCCATTTGAAATGCGTGAAGAATTGTTTAAAAACATCTATGATGAGTTGGGACAAGGAAATTTTGCTGAAGCACATCCCAACTTATTCAAGCGACTGATAGATCATTTTGGTGGGTTAGATGAAAAAGATATTAATCCTGAAACTTATTACTTTTTTAACACCCAGGTGAATCTATGCTGGTTTGCTGATGGTTTGTACTATGGCATTGGTGGAATGGGAGCTTTAGAACTATCAGTTCCATCTCAACATACTCGTATCCTTCAGCACTTGTATCGAAGGGGTTTGAGTAGCGAAATCGTCAAATTTTACGAGTTACATTGCCAAATTGATTTAGTTCATGGTGATGGTTGGTTTGCTGCTGCTAAGCCATATTTGAAAACTCGTGATGAATTCCAAAAAGTCCTGATTGGTGCTGCACGTATG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 6 3974002-3974333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3974002 37 94.6 36 .........A........T.................. TAAAAAAGGTGGACTTGATAGATGCTATTCGTCAAG 3974075 37 100.0 37 ..................................... TTGTGCCAGTCAATAATAGTAATTTCTTGAGGAGTTT 3974149 37 100.0 34 ..................................... CTTGCAGGCTCCCCATTGTCACGATGGATTATTA 3974220 37 100.0 40 ..................................... TTGCAGCGCAAAACATTATTATTAGAGTCAACAGCATCCT 3974297 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 98.9 37 CTTTCAACCCGCCTCAAGGTGTGAGGGGTATTGAAAC # Left flank : GCAAGTTGTTGGTGTAGCGAATACTTACCCATTTCATATGCTCCAGCGTTGCTGTAACTGGACTGTGGATTATTTAACTGATTTAGAACTAGAACGAGTACAGGAAGTCTTTTTGCAAAAAGAGTCTCAGCCTACAGCAACTGAATGTTAGAATATTATACTGTGGTAGTGCATTGAGTTAACAAGACTCAGCACTAATTAAGGGGAATTAGCTCAGCTGGTAGAGCGCTGCGATCGCACCGCAGAGGTCAGGGATTCGAGTTCCCTATTCTCCATATGTACATTTGTACAGTGACACATTATTTGTCCGTGTTGACAAATTCATGTCCATATTGTCAAATTGCTGTCTGCTATGCCAAATTAATTGTCCTTTAACTTATCATCAAGCTACTATACATACCTAATTCTGTGTACGATCGCAGCGCTCCTTTCAACCCACCTTAATTCTACAACTGTAACAGTGTTTTAATCTATTAGACTTTCAAACAGAACAATGCTGA # Right flank : CTCCAGCGCCTCAAATCCTTCACTAGCTAAAACTTCCAGAAGCATTTTTGTCAGGTCTGCCAAAATTGCCTGTCCGTTAACACTTGAAAAAGTAAATTAACTGACATCATAAAAGCTATAAGCCTTAATCAATAAGCAATTTGAAGTTTTGGCAGATCCCCAGGGAAATTGACCCCGCTTCGATTCGCCAAAAAAATAATTAAGGTGGGTTCCTCCTTGGTCGGAGGTGATTCGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTGTCCTCAAGGGACAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTTTGACAACAGTCAAACTAACCCACATTTACACAGTACAGAGGCTTTTAACAAGCATGAACTGCGGCGCTATTACTTATACCTATTCTATTTTCAAGGTTCGGTTTTTTGTCAATCAGGTTTTTTGACGGTAATTGTAAGCAGCGATCGCTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGGTGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 7 3994054-3993429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3994053 37 97.3 37 .................A................... TTCCGGCAATGCGTAAGCAGCAGCGTATCCTATGGGA 3993979 37 97.3 37 .................A................... ATACCCTTTATCTGACCATGAGCCGATGCCCACTTCA 3993905 37 100.0 37 ..................................... ATAGTACCATGAGTGCCTGCCAAGCATATCAACAATT 3993831 37 100.0 36 ..................................... ATTATGCGTGAAACTTTTAATTTGAAAGGCTTTAAG 3993758 37 100.0 34 ..................................... TAACGGTTGTCAATCATCTCAACATGACCACCGG 3993687 37 100.0 36 ..................................... TACATATGATAGATAAAATGTACAATATTATGAAAC 3993614 37 100.0 37 ..................................... ATAAATGCTAATTAAATCAAGAGGTGGGTTCCATTAG 3993540 37 97.3 38 ................................A.... CAGCACGGGGGATTGGCGCGTCTTGTTTTAAAGTCGAA 3993465 37 73.0 0 ..................C........TTTA.ATCGT | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.1 37 GTTTCAACAACCCTCACGGTAGGCGGTGAGTTGAAAG # Left flank : CCGACTCTACCTGTGCGTTCATCTAAATGTTTGTTAGCAGTAATTGTTTGGGTAAGCAAATGCTGCTTTTAGATGAGAAAGGACTCGCACCGAGACGCATGGGAAGTATAAGGTGTTAGGGTTCCAAACAACCCAGAACCTTAGCTCTTGACATCAAACTCTATTAGCTTGGTGTTGGGTGCCAGAGCGGCCTGTATAACTGAAATCTTTGATTTTGGTTTTACGAGGAACTTCTATCTCTTACTTTATAGCAAAGTAAGGGTACGGGTATACCGTCACGGTGGCTACCGAACACCACCCCCTAATTTTTATTTTTGGCAAGTCAAAGCAGAGGCAAAATCCCCTGGGATATGCCAAATTGCTAAAACTCTTATCTTGACTGGATTTGAGAATTTTCAAGGCGAATCAAAGTTTATTTATTGGCGATAGAAAATACGCTTTTAAGTAGATGTCAAAATTGCCTGTGAAAAACAGTGAAGATAAGCGTTTGACAAGTCAGG # Right flank : ATAATTAGTTATTAGGGTGGTATGAAAGGAGCGCTGCGATCGCACGATGTAACGCAGCATTTTTATATGAAGTAAGTCCTTTTCTTGACTGAGACTAACAAGGTGAATGCAAAAGCACTTAAGTAATCTTTAGTTACATAATATTAGCCTGGCTGTAACATTCTTGATTGGAGTCCATGTCTGTCACTAATTTTCCTAGTAATTTTGGACAATAATTCTTTAAAACTGGTTTCAACTCTGGACAATAATTCTTTAAAACTGGGTTGATAGCTGAAAGTTAGGGAAATACGTAAATTATGTCGTTTAGCACTGTCAAATTGGACAATAATTCTTTAAAACAGACAATAATTATTTAATGTACATGTCGATTGCCAAATTAAATGACCACTTGACAAATTATTGTCTTTAAAAATATTTAGCTTAAAACCCTTACCAAGTAAGGGTTTTACTATTTTAGCCACAAAATAACCTTCGAGAGACTTATTGCCAAAATACTTGTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCCTCACGGTAGGCGGTGAGTTGAAAG # Alternate repeat : GTTTCAACAACCCTCACAGTAGGCGGTGAGTTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 8 4006932-4006535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4006931 37 100.0 35 ..................................... GCTACTTATGTTAATTGCACATTAAATAATGAGGG 4006859 37 100.0 38 ..................................... CTGGCAGAATAAAAAATTTCTAGCTCTATTTCCTTATC 4006784 37 100.0 36 ..................................... ATCGCCACTGAATAAAAGAGGCGATCGCACCCCTGA 4006711 37 100.0 38 ..................................... TCTTAATTTATCAAGTGGTTTACCACAATTCCAAAAAA 4006636 37 100.0 27 ..................................... ACTCTTCGTTAACAAGCTGATGCTTTG Deletion [4006573] 4006572 37 73.0 0 ..............TTAA....A.AAG.T.......A | C [4006538] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 95.5 35 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : TTAGTTTAGTAAAAAAATTCTGCACCTTGAAAATCTAATATAATAGAGAATAATAGCGCCGCAGTTCATGCTCTTTTGAGTCAATGTACTGTGAAAAATCTGGGTTAGTTTGACGGTTGGAAGACCGTTTTGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCTGCAATAAGGAGTAAGGCTAATTAAGCTCTAGCCGTTTTAGTAACGGTGCGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTGGCGAATCAAAGCGGGGTCAAAAACCCTGGAGACTTGCCAAACTCTGAAAACCCTTGTCATGTATTGAATTAAAAAATTAGTGTGTAAACTGATTTATTTTTTTCATTGTCATCAAAACCAGCTTTTTAACAGACTTGTCAAATAGACATCTGAAACGCTTGTATAACAAGGGTCTAGGCGGGAACA # Right flank : ATAAGTATATAGAGACTATTTACTTGCACAAACCAGACTTTAAAATGGTTAAAGACTATAACTGAATTATTAGGAGGGTTGAAAGGAGCGCTGCGATCGCACAGCATTTTAATTAGTGAGTTGGGCAGTAAAAAATCACAAGGACAAATAATTTGTCGTTTTGGTTATTTTGACAATTAATATGTCGCCACAGACAAATAATTTGTCGCTCTACAGTACATATGGTGTCCATTAAATTATTATTGTCCACTTTAAAGAATTATTGTCATCTCTGCAAACCACATCTAAATCGCTATAACCATTATATATCAAGGATTATAGCGATTTTCAATCTAAAATTATTCTCTGGACACTTTTAAATCAAATGATGTCATAAATGCTCTAAAATTTTAAAGTAAATGATGTCATATTTTTTAGGAAAAGATTATGCCCAGAAAGTCTACCAGTCAAGCCTTTTCAGTATTTGAGACTGAAGACACAGCACAAATTGAGGAAAAAGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 9 4787353-4789231 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4787353 37 100.0 34 ..................................... CATCTTGTGCTATCACATCCTCCCTAACCTTTAA 4787424 37 100.0 38 ..................................... CCATTAAGATTTGATGGAAAAATCAGTCAATTAATAGA 4787499 37 100.0 38 ..................................... TAAAGAAAAATTACATTATTATTTTTCGTGATGGAAAA 4787574 37 100.0 38 ..................................... ACTGCTTCAAAAATATTCTCTACATTCCAGGCAATTTG 4787649 37 100.0 35 ..................................... TCCTCTAAGGTGGCTGCCTTCGGGAATAATTCTTA 4787721 37 100.0 36 ..................................... CTTATAGTCAACCTATTGACGAAACTAGATGAATTT 4787794 37 100.0 37 ..................................... GGGCAACTCTTTGTTGAGCAAATCAGAGATTATTTCT 4787868 37 100.0 36 ..................................... TACCTTTGCCACCAGACATCAAAAATGCCCTAGAAA 4787941 37 100.0 39 ..................................... GGGCGAACCATTTTATATATTTACTCCTATAGGATCAAG 4788017 37 100.0 34 ..................................... GTTGACATCGGAGCTTACGAATACAAGCCTTGAT 4788088 37 100.0 37 ..................................... CCTCGCCCAATAGACGGCGATCGCAATGGCTCTGCGG 4788162 37 100.0 40 ..................................... TAAAATGTTTAATAATCTTGACGATAAGCCTTCCTTTCTT 4788239 37 100.0 37 ..................................... ATTGGCTCAAAGGGCAATCTAGGGAACGTTTCAAGGC 4788313 37 100.0 37 ..................................... AAAGCATTCTTAGAGGAAATTAGCGATCGCACTCTAC 4788387 37 100.0 36 ..................................... ACCGCTGTGTTTTCACAGCAGTTTTTTCTTTGCTGT 4788460 37 100.0 34 ..................................... GATCATTTCAATATCACTTACGAATGACCTCTCC 4788531 37 100.0 37 ..................................... TAGAAATCGCCCTGATAAGCTCTATGCTTGTCGGGGC 4788605 37 100.0 37 ..................................... ATCGTCCCTCGAATTTAATTAGGCGATCGCTTACAAG 4788679 37 100.0 34 ..................................... AAGACAAAGGTTGTACTTCTCTTTAAAATCCTGC 4788750 37 100.0 38 ..................................... AGTGCGTCGCCTGTGGGTTTATCATTATCCCGGTCAAT 4788825 37 100.0 38 ..................................... AAATTCAACTTATACGGACGCACAATGAGCGACGGACG 4788900 37 100.0 37 ..................................... ATTCTTGATCATCGTCAGGATCATCGTTGAAAAATTT 4788974 37 100.0 36 ..................................... AAAGACTTTTTATTATTGCCTACTCCAACTGCTACA 4789047 37 100.0 36 ..................................... AAGAATATATCCGACATGCTGAGAATAGTTGACAAA 4789120 37 100.0 38 ..................................... GGTTGAGCAATCCAAGCGATCGCTCGATAAATTCAAGG 4789195 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ======================================== ================== 26 37 99.9 37 GTTTCAACTCACTACTACCCCGCAAGGGGATTGAAAC # Left flank : TGAAATTCGGGCTAAACCCGAATTTCATGGGGATTAGAGTCCGATTTGATTTATGAAAAATCTAAGTATCTGTAGGGTGTGTTATGGCGTAGCCTAACGCACCTAAATCGTTAACTGGTGCGTTAGCCTTTGGCGTAACGCACCCTACGTGTATTTCAGAAATCAAATATGAGTCCTATAGTTATATTTTGCTAGTATTTACTAAGGAAGTGCTAAGTTTTAATGTAAAAAGTTACATATAGTTCATAAAACCTCGACAATAACGAACAATCATTTTATGATTATGTAATCAGCTTGATGTTTGGCACGGCAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAATCAATAATTACAGCGTTTCAATAGTTAGAGTAAATGCAACTATTTTGCAATAAAATTGGCTGAAAATTACCAAAATTTCTCCCCCGCCAAAAACCCTAACAGAAAGCTTGCTCTGTAACAGTTTCAGACTGAAGA # Right flank : CATGCAACCAAAACTCTCACAAGCCCACCCTACCAAAGCGATGCTTTATTTCCCCTCCCTGTGAACGGGGAGGGGATTAAGGGGAGCCAGTGCGGTCTTGGGGTCTCCCCAAGTGGAGCAAGAGACTGACAAATAAAAAAATACTCAATTACTTCTTGTGGGGTGGACATCTTGTCCGCCCATAGCCAAGGGCGGGCGAGACGCCCACCCCACAAGACCACAAGATTGGATAATTTATTTGTTGGAAGTCCCCAACTGGCGTGTGGGGTTCTTGATATAACTCTTAACTCAGCACTCAGGACTTTCTAATTTTTCCCATTCGGACGCTGAATAATCGTTTCTATCACCCGCCGCTTGGCTTTCGGATCAATCCCTACCAAACGCACATACTCATTGCTATATTCAGCTAAACTGGATTCTAAACTTGAGATGGCATCTGACTCTGCATCAATGTGGCTGTTAACACAACTTTGCCAAGAACCTGTACGGAAACGACGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTCACTACTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 10 7661496-7660296 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071065.1 Nostoc sp. UHCC 0702 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 7661495 37 100.0 34 ..................................... TTACTATAAAAATGTAAACAACGAATGATAAAAA 7661424 37 100.0 36 ..................................... AGGCGTCTGTCCAAATTAGCTAATACAAAAGCGATC 7661351 37 100.0 37 ..................................... TATTTCCAGCCTTCGTCAATCATCGCAACTGCTCCTA 7661277 37 100.0 35 ..................................... GACTTATTCCTCTTTGAGTAGCGACAACTGTTGAA 7661205 37 100.0 35 ..................................... TTTCTTTGCCGCTTGATTACGGATTTGAAATAAAA 7661133 37 100.0 34 ..................................... ACTGTATCCTTTGCCGAGCTTGGAGTCTTTTTGA 7661062 37 100.0 36 ..................................... ACACTTATGAGAAAAAAGGAGAGCGCAAGGCAAAGG 7660989 37 100.0 34 ..................................... GCACACTGTATTTCTCGTTTCAGTTACAAAACCG 7660918 37 100.0 39 ..................................... AGGGCGAGGGGCGATCGCTTGTCGTTAAGAGCCACGCTT 7660842 37 100.0 37 ..................................... ATGTTAACTACGCCGTATTTATTACACACCTTCACAT 7660768 37 100.0 38 ..................................... CCTCTAGGGTCAATGGTCGGGGCTGCAACACCTTCATT 7660693 37 100.0 37 ..................................... GCCCAGCTTCGAGTTTCATTTGCTGAATAGCAGAAAG 7660619 37 100.0 35 ..................................... GGCACCCCAGTAATTATTTTGAATAATGCTTATGT 7660547 37 100.0 33 ..................................... GTCCATGTTTGATTTCCTGCCAAAAAAGAGTTT 7660477 37 100.0 35 ..................................... TTCCACGAATCACTTCGTTGCTCTCATTCCTCATC 7660405 37 100.0 36 ..................................... TTGCGTTCGTGTCTATTTCACTAACTTCTTGAAAAG 7660332 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 100.0 36 GTTTCAACTTACTACTACCCCGCAAGGGGATTGAAAC # Left flank : TTTCCCACAGTCGTTAAACCCCACCCCCAACCCCTCCCCGTTGACGGGGAGGGGATGCAAAGCATAGCTTTGGTGGGGTGGGGTTCTTCGAGTGTCATATCATGTCCGGCAAATTGCCCATAATAAAAACACCCCACCCCCAACCCCTCCCCGTGAACGGGGAGGGGATGCAAAGCATAGCTTTGGTGGGGTGGGGTTCTTCGAGTGTCATAAGCAATCAAGCGGACATGATATCATTACTATAAAGATAACCTCGACAATAACGAACAATCATTATATAATTATGTAATCAGCTTGATGTTTGGCACGGCGAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAAACTTGACAAATCAATAATTACAGCGTTTTAACAGTTAGAGTAAATGCAAGTATTTTGTAATAAGAGCGGCTGAAAATCACCAAAATTTCTCCCCCGCCAAAAACCCTAACAGGAAGCTTGCCCAGTAACAGTTTCAGACTGAAGG # Right flank : GTTTCTGCCCAGTGAGCATTTATTTGATGTATAGCATAAGCCTTGGTGGTTAGGACATCAACAGATGATAAAACCTAGACACAAAAAAGACTTTTCACCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCCCAGCCCCCAGTCCCCTGCTATAGTTGCCCAATTTCCACCAGAAAAAAACACAGGCTTTTTGTCGAGCGTGATAGCTGGAGTACTTGCCAGTATAATAACCAGGATATTATTTAAAAAAATTCGCAGATTATAACTTTTTCCTGTGAGTCCTCCGTGTCTTGGCGGTTCGATATTTACAACCATGTCCACCAAACCTACAATCCAAAGCATATACACCGATGGTGCTTGCACCGGCAATCCTGGCCCTGGTGGTTGGGGCGTTGTCGTTTACTTCGACGATGGCTCAGTCCACGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTACTACTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //