Array 1 232551-232216 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRE01000003.1 Nocardia puris strain DSM 44599 Ga0244502_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 232550 29 100.0 32 ............................. ACGCGACGCGCTCGGCCTGATCTGCCTGGACC 232489 29 100.0 32 ............................. GCCACCCCGATCACCCTGCTGACCGCCGAGTC 232428 29 93.1 32 ............TG............... CCTGTTGTGTCGGCCTTAATTTCGACGCCGAG 232367 29 93.1 32 ...........C.G............... GCGGCGGCCATGAGTTCTTGGGTGGTCCCCTT 232306 29 89.7 33 ...C....................G...T CGGCGTCATGGGCGCGCTGATCGACCCGCTCGG 232244 29 69.0 0 ...C...AGT.........A....GTT.A | ========== ====== ====== ====== ============================= ================================= ================== 6 29 90.8 32 ATGGTCCCCGCGCATGCGGGGATGAGCCC # Left flank : ACACCTACTTCTCCTCCAAGGAACACCTGGTCGCGGAGATCTTCTGGCGCCGCCTGATCGCCTCCCCCTCGCCCGCCAGCGAGGACCCCGACCCCGTGGTCCGCGTCATCGCCGAACTGCGCGACATCGCCCTGCTCGTCGCCGACGAACAAGAACTCTCCGGCGCCGTCACCAGCGCCCTGCTCGGCCGCGACCCCGACGTCGCCCACCTGCGCGACCGCATCGGCGCCGAAATCCGCAAACGCATCCTGCGCGCCCTCGGCCCCGACCCCGACCCCGACATCGTCGAATCCCTCGAACTGCTCTACGCCGGAGCGTTGGTCCGCGCGGGAATGGGCTACGCGTCGTACGCGGAGATCGCCGACCGGATCGAGAAATCGGCGCTGCTGATCTTACGGTGAGGGGATACGGTGGATGTCGCGTCCGGACGCGATGGCCGTGGTCGGACGAAAGTGAATGAGAATCGGCTCAGCTCTGCGAAAAACCGCAGGTCAAGAAGT # Right flank : CGATGCCCCCCCAGCCGGGCGGCGCCGAAGTGCCAGGCGGTCAACCATTTGCAGAGTCGCGATCATCGCCGTTGGTGGAATCCGTGCGACTCCGCCCCGTGAGCGGATTCCGAAGTGTTCGTACCGAAATGGATAGTATCGCGAGCGATAGTATCTCTGGCGATACTATCTCCGGCGGTACTATCCATCCCTACCGTGCCTGTAGCACGTGCTCCCCGCGCCGGCGGGGTTGAGCCTGGGCCGCCGAAGTAGTGCCGGCCATCGGCGTCACGCTCCCCGCGCGTGTGGATCTCCGCATCAGCACCTTGCCCTGGTGGTTCGAAACTGCCCGGTGGGCAGTTGTCGCACGCCCGCGATCGCCGTCGACGGTGGGTGGGCGGCGCGGATGCCCGACCAAGCCGCACTTTGGATGGTCGATCTGGGCGGGAACCCGGTCAGGGGTGGACGTTTGTATAGTTGCAGCAACGATGAAGGCCCGGCGTGGGTAGTGGGGGTGAGCA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCATGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 251481-251933 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRE01000001.1 Nocardia puris strain DSM 44599 Ga0244502_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 251481 29 100.0 32 ............................. CTCGCGCGGTCGGCCCACGTGACCTGGAGGAT 251542 29 100.0 32 ............................. TGTTGACCGCGTCGGAGAAGTCGAGCGAGGGT 251603 29 96.6 31 ............................C TGGTCCCAGCCCATCCGTTCGATCGCGCACC 251663 29 100.0 32 ............................. TCGCGGATGAAGTGACCGACGACGACCGCGTG 251724 29 100.0 30 ............................. GACCGGGTCGACCTCGCTGGGGTTGCTGGT 251783 29 100.0 32 ............................. TCAGGTGCGACGGTCACGGTGAGCCTGACGAC 251844 29 96.6 32 ............................T CGAGCATCGTTGATCAATCCTCGGGCGGGCTC 251905 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGCTCCCCACGCACGTGGGGATGATCCG # Left flank : CGCCCCCTCCCCCGGCACCCCAGCGTCCTCAGCCGCTGCTTCCCACTCGGTCAACGCCAATTCCGAACCCGTCCCGAGTTTGCACCGGACGAAACCCGGAAAGCCTTGGGTCACTTCAGCTCCCAGCGCTGAATAGAACTTTCTCGCGCGATCCACATCCGCGACACCGAGCATGATCACACTCACCTGAATCGCCATATCGCTGCCCTCGCTTCGTGGTTGATCGATTCGTTCGCGACTCCGGATTCGCGCCGGTCTCGATTTTTCCCGCACGGCCATCAACCATGCTTCTCGATTCCTGACCGATCGCGCCCCCGACGCACGCAGACGAGACAGCCGCATATCGACCCAGGGCGTCGACCTGCCTCATCTATCGCTGCCCGGTGTTCGCGTCGCACCGCATGCCCACGCAGCCGCGCATCACTCGACGGCCGACTGAGCCCGTCCCAGGAGTGGTCGAAAAAGTGGTTACCAGCCGGTAGACTGCCTGGTCAGGAAGT # Right flank : GTGCCTAGTCGATGAACGCCGCAGCCGCGGCACACCCAGACCGCAGCATCCGCGGCCGACACCGCCGTAGCGGATGACCACCTGTTGAGTGGGCGCACGATCATGGCGAATACGGCTTGTCCGCATCAGGTTTCAAACCTGCACAAGTTAATTTCGCTGGGCTCGCCCGTCGAAACTGCCGGATGAATCGAATGACACGAGCTCGAACACGACCGAACCATCCACAATCCGATCATCGAAGTCACCGCAACGAAGCCTGGCTCAGCACACGGCGGGCCAATTCCGCTGCGGTTCCCGTAGTCGTATCGACGACCGCGTCATAGGGGTATCCATGATCGTGCACTATGTCGAAATACCCACGCGCCAAACCGATTTCAGTGCGACGACGGGCCAACTCTCGTTGCTCGGCGACAGCGAGGGGACAGTTGACGCAGACCAAGTGAACGCCCAGACCGGCCAGCGCCTCCATCCACATCGGCATAAGATCCGGCGTCAACAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 256616-257316 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRE01000001.1 Nocardia puris strain DSM 44599 Ga0244502_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 256616 30 93.3 31 .........................C..C. CTGGTGTGCCGATCTCGCACGCGAAGTCCGC 256677 30 100.0 31 .............................. GCAGGTCGCGAACATCCGCGGCCAACTGTCC 256738 30 96.7 31 .............................A GCCTGTGCCCGCCGGTCATCTCCAGTGGACA 256799 30 100.0 31 .............................. GGTCACTTGCTCGGCGGTATCACAATCGACC 256860 30 96.7 31 .............................G CTTGTCACCACCCGCGACTACGCCGAGGTGC 256921 30 100.0 31 .............................. TGACACCGAACTCTCCTGTGATCATTCGTGT 256982 30 96.7 31 .............................T TCGCGAACTGGCGCAGCGTCATCGACGTGAA 257043 30 96.7 31 .............................T GGACAATGCGGCCGATACTGGGCTGGGGCAT 257104 30 93.3 31 ............................CG CGAGGACGGGTTCCCCTACCGCAAGCACGCC 257165 30 93.3 31 ............................CA TGACGCACCCTGTCGTGTCGGTGGCGGCGGG 257226 30 100.0 31 .............................. GGTCCAAGGCCACGAAATGGCCGGGGTGATC 257287 30 86.7 0 .........G................GTC. | ========== ====== ====== ====== ============================== =============================== ================== 12 30 96.1 31 GTGCTCCCCACGCACGTGGGGATGGTCCGC # Left flank : CGACTTGTCATGGCACGCTCCGATGCACGACCTGCTGCGTCGAGCAGTCGCGGAAGGGCTTGGGGAGCAGAGCATTACGGCGCTGATCGAGTTACTGGCCACTTCTCTGGATCGAGAGTCGACTGCACAACTCACCAGTCAGTGAAGTCCGAGATGTCCGCCCGGTGCGGCAGAATGCGCGCTATTGCCGGCGGGGATCCGCGACGTCGAAACCTGTCTGCGTCAGTGCGGCGGATCGACCGGTCGAGCATTCAGCGGTCAGGCGATTAGTCACGGAGGTCGTCCATGTGCGTATCAGTTGCTCGGCCGGGCGAACAGTCAGGATCCCGCAGGCGATCTCGGCTGCCGGTTCGCTAGGACAGGGGCAAGAAGTCGCGCGGACTATCGCCCCACCGTCGCCGTTCACCTACCTCGGCGCTGTCGCACGGCACGCCTCCTCCTCGCCGCACTCAGTGGTCGAAAATCTGGTTACCGACCGGTAGAATGCCTGGTCAGGAAGT # Right flank : CTTCCCGGAGCAGGCCGGGCACGAGGTGGGTCGACCCCCGAATCGTGGGATGACCGTGGTTACAGATGATCAGGCCCAGCCGTCGAGACACTCCCACCGGTGAGAGATGTCAGGCTTGTTGCAGCACAAAGAAATACGGCTCCGCCAGACCTCTCAGGTCCATGACTCCCAGCAGTGTCGCCCCGTCCACCCTGCGGAAATGGTCGATGATCGGCAAGTGATCGTAAACCATTGCGGCACTGACAATTCCCCGGTACTCGATGTTCCGGAGACGCGCCGTCGGCCTGTCGGTGCGCAGCGCTGGGCGCAGGACAGGGAGGAGTTTTCGACCGGCTTGGACGGCGGGTAGCGGAATACGCCCTGCCAGGCTCAGAGGTACGCGTCGGGGATCGACCGGAAACAGGTTGCCCGCGTCGTCGGCGAAGACAAGCGGGTGCACGAAATCGGCGCTGTCGAAACGCTTTCCATACCAGCCACTCGCGGTCAGCACGCCGTCGAGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 677656-677137 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRE01000001.1 Nocardia puris strain DSM 44599 Ga0244502_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 677655 30 100.0 31 .............................. AGCACGGGCTGCTCGCCCGCATCCTGCCGGA 677594 30 96.7 31 .............................T CCGTTCCGATGGGGGTGGTGGGTCCCAGTGC 677533 30 96.7 31 .............................G GTCACCTGTACGTCGAACCGCTGATCATCAC 677472 30 100.0 31 .............................. AGGAGGCGTTCAACCTCATCACGTCGTCGGG 677411 30 93.3 31 ............................CG CCTCCAGTTATGCTGTCGCTTGTGTGAGGTC 677350 30 100.0 31 .............................. TGAACATCAGTGAGTCGTCCCAGACGTTGTG 677289 30 90.0 31 .C..........................CC TGGCGACCGGCGCGCACGGAGTGATCCAGGG 677228 30 96.7 31 .............................G AGTGAACGGCGATGCCTGACACCACGACCCG 677167 30 76.7 0 .......T.....T.....C.GC....G.G | T [677142] ========== ====== ====== ====== ============================== =============================== ================== 9 30 94.5 31 GTGCTCCCCACGCACGTGGGGATGGTCCGA # Left flank : CCCACCCTCACCCTGATCGAGGTGATGAACCGCGCCAACCTCGACTCCACCCACTCCCTCGACGGCCGCGAAATCACCCTCTCCGGCTTCATCCTGCGCGCCGAACACGGCGACGGCCTCGACCTCGCCCGCGTCGCCATCAGCTGCTGCGTAGCCGACGCCCGCTACGTCCGCCTCCACCTCACCGCCCTCCCCCAACCCCTCCCCGAAGACACCTGGATCGAAGTCCGCGGAACGGTAGTCCCCAACAGCGCCCCCACCGACCCAGAACTGACCCCGACCCTGACAGTCCACGACTTTCGCTTGATCGAGCGACCGGAGAACTCCTACGAACGAATCCGCTGAGTGCGAGAGTCGACCCCATCGAGACTTCGCCAACTCGGCACAATTCACGAACCGCCCCGACGCGTCTCTCACCAGCACCCCGCCCTCCCGGAAGCCGAATCGGAGTAGTGGTCGAAAATAGGGTTACCCACCGGTAGAGTGTCTGGTCAGGAAGT # Right flank : ACGGTACGCAGTCAGTCCGACTCGGATTTGGCGAGTTGGCGCACCACCACGCTCGCGGGGCGGAGGGAGCGGGTGCCGACGGTGAGGCCCGGGGCGATGAGCGCGTCGACGGTGCGGTCTTCGGATGGGTCGGTGGTCGACACCACGTCTGTGGCTTCCATGGTCAGCGAGTCGAACGCTGTTCCGGGGCCCGGGGTGAGGAGGGTGGCGCCGCGGCCGGTGAGGAGGCGCTCGATGCGGGTGGTCACGGCGTCGAAGGCGGCGCGTTCGCGCTCGGATTCGGCGGTGGCGGCGCAGGCCGAAGTGTCGCCGTGGAGGGCGAAGAGCTCCACAACCAAGGGCAGGTCCGCCCCCGCGCGGTCGCGGCGGTCGCGCTCCTTCGCCTCGTCGGCCAGGCGGTCGAGGGTGGCGGCTTGGCGGGTGACCACGCGGGTCAGGTCCTCGACGCGTTCGGCGAGTTGGGCGAGGGTCTGCTCGACGGGATCGGTCATAGGCGCACT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 167718-167566 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRE01000005.1 Nocardia puris strain DSM 44599 Ga0244502_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 167717 30 100.0 31 .............................. CCCTGCCGAGATCCTCGAACTTGGTGCCGAA 167656 30 96.7 31 ............................T. TCGTTGAGGTTCAACGGTGTTTCGTCTCGGA 167595 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : TCGAGGGCGATCATCGCCATCACGCCCGCGTCGGCCTGCACACCGCCCGCCTCGGTGTCGCCCTCCCACGCGTCCGGTTCCCGCCACGCGGCGACGAGCGCCTTCAGCTGCGCCGGGATCCGAGTGCGCCAGTCGGGGGCGAGGTTCTCGCGCCCACCGGGCGGTGGGGACGCACTGTTGCCCACCGATTCCTTGGTGGCTGCCTGGCGGAACGCCTCGGTCAGGCCGACGACATGATCGAGCAAGTCACCGACGGTCATACCGGCACAGGGCGTCGCTGCATCGAGCTGGTCGTCGCGGATACCAGCGACCACCACCGCCAACTCGTCGGCCGCGGTGTCGAGATCGAAGGGCTGCATGCGGGTCTCCTCCGTGGATGGAACCTTCCACCCATATCGACGCCGCGAGCCTCCCGAATTCATCGGGTGCCGGATCCCGATCCGCATTCTCGAGTGGTCGAAAATGCGGTTACCCACGGGTAGAGTGCCAGGTCAAGGAGT # Right flank : GTGTGGTGGGCGGCCGGGTCCGCCCGGAAACGCAGCAGGACCGTCCGCGACTACTTCACCTCTACCGCAACGGGATTCGGTCCAGTGCCGGGACGGTGGCGTTCAGGACTCGGAGGCGGCTCAGGGAGAGTTGGGCCTGGCCGTTCGAGCCGGCGCGGCCGGCGGTGCCGGTCACCGTGCGCAAGGGACCGTTGTAGATGATCTCGTGTGGGACGCCGGGGTGGCGGGAGAGGGCGAGGACGAGGAGGGCGTCGGCGGCGGCGTGGGAGGTGGTGCGGAGTCCGATCGCTCGGCTGCCGTAGGTTCCTTTGATTTCGACCGCGCGGCCGTCGGCGGCGATCGCGTCGTGGCCGGTGGTGGAGGGAGGTTGGAGGGTGATGTCGAACAAGGCTTCCGCCGCGGCTTCCGCGAGGGCACCGACGAGGTGGCCGTCCGGGGTGAACTTCCGACCCGGGTGGAGCGCTTCGAGTTCGGCGACGATCGCGTGGAGCTGCGAGACC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 157658-158361 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRE01000007.1 Nocardia puris strain DSM 44599 Ga0244502_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 157658 30 100.0 31 .............................. GAACCGTTTTGAGCTGGCAGGCCATGAATTG 157719 30 93.3 31 ............................GT CCCACTCCCGCTTCGAGCGGACCGACCGCAG 157780 30 93.3 31 ............................GC CTTGCGCATCGTTGACACCGATGGTCGTGGC 157841 30 93.3 31 ............................TC GACCTCGACGCCCGCAGCGCCTCCCCGGTCC 157902 30 100.0 31 .............................. ACATCTGGACGCGGCCCGAGCGACTGCTCCG 157963 30 96.7 31 ............................G. CGTAGGTCTTCGCGGCGGTATGGATGTCGGC 158024 30 93.3 31 ............................GT ACGGCAACGAGGCCGCCCACGGCGTGCTGCG 158085 30 93.3 31 ............................GA CGACACCGACCGCCTCGTTCGCCCAGCCCGC 158146 30 96.7 31 ............................T. TCTTCGAATGGCTCTAGTGCGAGAAGTGTCC 158207 30 100.0 30 .............................. AGGGCAGTGGCTGAAGACGGAGGGCGCGCG 158267 29 83.3 31 .....-.....AT............G..G. TTCCCGCGTATGCGGAAGGCGCGACAGCGGA 158327 30 86.7 0 .............CT.C..........A.. | A,T,TCG [158347,158349,158352] ========== ====== ====== ====== ============================== =============================== ================== 12 30 94.2 31 GTGCTCCCCACGCACGTGGGGATGGTCCCG # Left flank : CGCACTCGCCCGCGAGGTCGGCTTCACCCCCGACCTCCTCGCCCGCCGTCCCCACGAGGTGAGCGACGGCCAACTCCAGCGCGCCTGCGTCGCGCGCGCCCTCGCCCAGCGCCCCCGCTTCCTCCTCTGCGACGAACCCACCGCCATGCTCGACGCCGCCACCACCGCCGCCATCGCCCGCCTCCTGACCACCCGCGCCACCGCCGGTGACCTCGGCCTTCTCCTGGTGAGCCACGACCGCCCGCTCCTCGACGCCTGCCACGCCCACGTCCACACCCTCACCGCGGGCACCCTCACCACGTGAACGATCCGCCGCACCGCCCCCACCCCACCCCCGGGTACCCTGAACCCGACACGCCTTTCCGCCGGTGCTGAGCAACTGATCCATCGGTGTCTCGGATACGTAACGCCGACGGTCAGGCGTGTCACCTTCACCAACCACCTTCCCGACAGTGGTCGAAAACTTGGTTACCGGCCGGTAGAAGCCCAGGTCAGGAAGT # Right flank : GCCGACGATCCTGAGTGGTCTGCCCTGCATCCGCGCGATCGACAACCTCAGCGCCACGTGCGGAGACCGGGCCCGACATTCGACGGTTCGCGCACGTAAGTCGCTGAGAATACTGTTGTTTCGTAGACCGCCGATCAAATACCCAGCACCCCAACAACTCTCACCGCGTCGTATACCCACCATTGGCGAAGATCGTCTGTCCCGTGATCCATTTCCCGTCGGTGACGAGGAACTCGATCAGCGGGGCGATGTCGGTGATGTCGGTGAGACGCCCGCCGAGGGCCTGGGACTTGTGGAACTCCACGCGCTCCGGAGTCTCCTGCCCGTAGAAGAACGGGGTGTCCATCGGTCCGGGCGCGACGTTGTTCACCGAGATGCCTCGGGATGCGAATTCCTTGGCGGCGGCGCGGGTGAAGTGCTCGACCGGGCTCTTGGCGCCGGCGTAGGTGGAGTACCCGTCGGTGAACGCGGCGAGCAGCGCGGTGAGCACGGTGACGACG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //