Array 1 43636-42215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZS01000010.1 Neisseria meningitidis strain NM2432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43635 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 43569 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 43503 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 43437 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 43371 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 43305 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 43239 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 43173 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 43107 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 43041 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 42975 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 42909 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 42843 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 42777 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 42711 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 42645 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 42579 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 42513 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 42447 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 42381 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 42315 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 42250 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //