Array 1 2-334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWNN01000084.1 Vibrio cholerae strain GP8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 63 28 100.0 33 ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 124 28 100.0 33 ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 185 28 100.0 33 ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 246 28 100.0 33 ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 307 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : AG # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27819-27363 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWNN01000010.1 Vibrio cholerae strain GP8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27818 28 100.0 33 ............................ CAAGGAAATTTGCTACCAAAAGACGTGATCGAG 27757 28 100.0 33 ............................ TCAAAATACTTCTCGCACATCCTGCAAGCGCTG 27696 28 100.0 33 ............................ CCGAATACAACGGGCAAGCCTGCGCTAACGTTC 27635 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 27574 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 27513 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 27452 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [27431] 27390 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.4 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : GATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGTGTCTTCCCCACGCAGGTGGGGGTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //