Array 1 200195-199926 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE150371.1 Delftia acidovorans CCUG 15835 acHMM-supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 200194 28 100.0 33 ............................ ACTGGAAGGCTCACGGCAGCGACAAGTACCCCC 200133 28 100.0 32 ............................ TGAAGCCCGCATGAATAAAGGCTTTGCTCCCG 200073 28 96.4 32 .........T.................. CCCTTGGCTGCTGCCTGGGCTGCGCGCTCTGC 200013 28 100.0 32 ............................ TGGCAGCAGCGCCCCAGACACCTGCTGCGCCC 199953 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CCGCGCTGCGCGGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCCACCAGCTTTGGTGCCAGAGGGCGCCGTGCCCTACCTGGTGCAACGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGCCGCATGCGGCGCAAGGGAGAAACCGCTGAACAGGCCGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCACGGCGGGCCAGGAAGGCTTCAATACTTATGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGACCCTTTTTCTGGCGGCCTGAAGACTGCCTTGTAAATCAACAGCTTGGCGGATGCCCCGGAATTTGGGGTGTTTGCCAGCTGGAGGTGAAAGCTCTTTCAAAATCAATGGATTGGGGAATTTTTTACCTA # Right flank : GCACGCACCCCCTCTCTTGGCTAGCCAGAGGCAGATGCGCAACTACGCGGTGCCCAATGCGATCCGGTTAAAGGCCGTGACGGCAATGAGCGAACAGACCGGCGCTCTCACGGAGCCTGCTGGTGCCACGCTGCAGCAGGGCGCCGCGCCTACTTCACCCGGCTTTCCTCCACGTGCTCCACGAAGGAGGGCGCTTCATTGAAAAGTTGCACGAGCTGCGCCAGGCGCAGGCCATAGGCGCATTGGGGGCGGCTGAACGCCTGGGCGGCCAGGACGATGGCGGCGCGGGCGAGGAACCATGCGTTGTCGAACTTCCATGCCGCGTCGAAGTGGGTGAGCTTCATCTGCCGGATGTGGTTCAGGGCCAGTTCCGTGGCCATGTCCACGTCGGCGTCCTCGTCAACCCAGTCCATGTCGGCGCAGCGCTTGTCGATCAGGGCGGCCAGCTCGGTTTCTGCGCGGTCTATGGACAGGGCAATCATCTGCTGCATGCTGGGCTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75931-75102 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE150357.1 Delftia acidovorans CCUG 15835 acHMM-supercont1.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 75930 32 100.0 34 ................................ CGTTGCATTGACGCTGGGCATCGCAACGGATCTC 75864 32 100.0 35 ................................ GCCAGATGGCACGCACCCCTAAGACAACAATGGCC 75797 32 100.0 34 ................................ TGGCTGAGACTGCAGCCCTGCGTGAGGCAGCGAA 75731 32 100.0 36 ................................ GATCAGCCCAGCAGCAGGGCCATGTGCTCGCGCTTG 75663 32 100.0 36 ................................ GGCGAGCAGATCAAAAATCGGCTCTACGTAGTCATC 75595 32 100.0 34 ................................ AGCTACGGCCCGTATCGCTTGGCCTGGGGTGTTT 75529 32 100.0 34 ................................ AGAAGCTCGATGATGCGCGCCACGACTCCGTTGT 75463 32 100.0 35 ................................ CTGGCCTCCACGGGCTACAAGGCCACCCTGCAGGC 75396 32 100.0 33 ................................ TCGCCGGCCCGGTAGGCGCGGTCTGCAGACTCG 75331 32 100.0 32 ................................ TGGCCCGCTACATGGCCCCCGCCGGCGATGAC 75267 32 100.0 35 ................................ TCCCCATGCGAAGCAGTCGGCCATCATTTGTGATC 75200 32 100.0 35 ................................ CAGACTGCGCCCGAGGGCTTGGCCACGCCGCCTCC 75133 32 90.6 0 ..........A.......AT............ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.3 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGCGTCAGCGGCTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAACCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCGGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCTATCCTGATCAACCGCATGAAGGTGGCTGGTAGCTGATTGGCTTGCGGCTGCGCATGCTGAGGAAAAGCGGCCTGAAAGGCCGCTTTTTTGTGGGCACCCAGTCACCGCGTGCCCCGGACGCAGTTGGCCGCACCAGCTCGCGTCCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGAGGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGCATCACTGCGTCTGTCGTGGTCCTTGCCGTTTTTCCGTGACAGAGCGCGCAGGTTCGCGATGGTGAAGCTTTTTTTGCAGTGGTACGGCTGGGTTATAAGCATGCC # Right flank : ATGGCCATCAAGCGCGAAATGACGGTTCGTGCAATCGCTGACAGCCCGATGCCTGCATGCCGGCAAGGCGCTGTCCTACTGGATGTGCAGGGTTTGGGAAGGCGACACGACTGATTCAAATTGTCAAATTTGTTCCTGAATGTGTTTCCTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTCCTTGCGGTGATCGTGGTCTGCGTGTGCGTGGCCGGCTTCGGCTGGATGAAGCTGCACGATCAGGGGGAGCAGTTGCGTGTTTTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGTGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTCGCCAGGAACGGCCTGGTCATG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 97824-97460 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE150357.1 Delftia acidovorans CCUG 15835 acHMM-supercont1.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 97823 32 100.0 36 ................................ TTCAACGTCGCGCATGAAGTCTCGGCGGCTCAGATT 97755 32 100.0 35 ................................ GTGGGTGGTCAGGGCTGGCATGGCGGGCTCCAGGT 97688 32 100.0 34 ................................ ATCGCATCGCGCACGATCCCAGTAGTCGCGCCGG 97622 32 100.0 34 ................................ ACGGCGTGCTCCACAAAGCCCACCCCGCCCTCGC 97556 32 100.0 33 ................................ GACCCAGCTCCACGCTGTACCCGTGCAGCCCCT 97491 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CCGGCGATGAGAAATGAGGTGTGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCCGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAATACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAACCTCCGCGCGAACCCCAAGTGACCGCCACCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGTGCGAGGGATTGGCTGAACGCCGATTCCGCGGCATGACAGCGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCCC # Right flank : CCCTGCCGCCACAGCAAGCGCCCCACGCATTTGAAACGAATCGCCGGACTCATTCCTCGCCGCGCAGACCGCCATTGAGAGAGAGTCCAGCCACTGCCTGCAGCAGGTACCCGCGTGCCTCATCCAGCGAGGGACCCGCATGCCCATCGATCCGCCGGATATAGGGAGACGTCAGCACAGCCAGGGCATGGCCATCGGGCCCGAGGATGGGGCAGGAGATGTCCACCACGCCATAGGACTGCAGGCTTTCGCTCTGCTTGTGACCCGTGCTGCGTATCTGTTCCAGCATGTCGTGCAGTTGTGCCTCGGGCAGATGTACCTCGCCTTCCAAAGGCGTGTGCTCGGCCAGCATCTGCGAGCGGCGTTCGGTTGTCTGGCAGGCCAGCAGCACATGGCCTGACCCGGTGTCCAGCAGCCCGACGCGTGCGCCCAGCCTGATTGACAGGCCCCAGTTCCCGGGGCCGGGGACCTGGGCCACGATCAGGACATTGCCACGGTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //