Array 1 95221-96269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPK010000007.1 Pseudomonas cichorii strain LCYJ21 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95221 28 100.0 32 ............................ GGTCGCAGCCAGCACTTTGGCTGCCAGGGTGC 95281 28 100.0 32 ............................ TTTTCTTGCTGGTCTTTCGGGAAGGCTGTTAC 95341 28 100.0 32 ............................ TGACACATCCGGTGCTGCTGGTGCCGCTAGGC 95401 28 100.0 32 ............................ TTTCTAGCGAGCCGCGTTTCAGTGAAAAAGAA 95461 28 100.0 32 ............................ AGCATCCATTCGGTGCGGGAAGTGGCCCAGTC 95521 28 100.0 32 ............................ AGCATCCATTCGGTGCGGGAAGTGGCCCAGTC 95581 28 100.0 32 ............................ AGGACGTACGCTTTTCCTCGCCTACCATGTAC 95641 28 100.0 32 ............................ TGAAACGCCGCCGTTCGCGCCAGCAAATTCTG 95701 28 100.0 32 ............................ CGCGAGCTGATCCGCCCCTTGTGTCCGCACGT 95761 28 100.0 32 ............................ AAGAACATCATCCGGGGCTTAGTCGAGTAGGC 95821 28 100.0 32 ............................ ACCGCGAGCCATGGGCAACACCAGATCAGGTA 95881 28 100.0 33 ............................ GATCTGAATGCGCTTGCCCAGGGCAACATCCAC 95942 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 96002 28 100.0 32 ............................ TCGGGCCGCTGGCCGCGCCGGTCGTAGAGCCG 96062 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 96122 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 96181 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [96207] 96241 28 89.3 0 ........T......A........A... | A [96253] ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.6 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCCGAGAGAGCCGACTGATTGGGTAGGATTTATCCGCGAGACGTCATTGCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCTCACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AAACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCTTCCGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCACGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCGTGCAAGCGCAGGCGGTCGCCCAGGCCGGTAGCCCTGCCGCTGATAGCGGGGAAGCTGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 105986-105237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPK010000007.1 Pseudomonas cichorii strain LCYJ21 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105985 28 96.4 32 ...........................T CAGTGTCACTAGGCATGAGGCCGACTGCTTTC 105925 28 96.4 32 ...........................T TGAGCGGGGGCTTCAAGCCTGTAGGGTACTCA 105865 28 96.4 31 ...........................T GCAACGCTTGCTCAAGCCCTTTCGTCGAAGA 105806 28 100.0 32 ............................ ATTTCCCGTACCACTGTCTGCATCACCTCCTT 105746 28 100.0 32 ............................ CAAGGCCTTTGGCCATAAGCAAGGCGGAGTAG 105686 28 100.0 32 ............................ TAAAAACTGGAGCAGCACATGAGCACAGCAGA 105626 28 100.0 32 ............................ TCGCGTTCAGCATGGCTTTCGTTGGTGGCATT 105566 28 100.0 33 ............................ TGCTGGCAGATCCAAGCGGTGGCTGCGTTCATA 105505 28 100.0 32 ............................ TTACAAAACTTGGCTGGCCGAGATACGCCGCC 105445 28 96.4 33 ......................T..... AGTGGCGATCCAGCCGGGCATTGCCTGTATGCT 105384 28 92.9 32 ............C.........T..... ATATCGCCATCTTCCCAGTAATAGAAATCCAC 105324 28 89.3 32 ...........CA..A............ TACGACCCGGTCATTAATGGTCATCTGCTCTC 105264 28 78.6 0 A..A.......AAC..........C... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 95.9 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GTCAAGAAAGGGTTCATTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATTTTTTGATAAATCACTTTGTGCAGGGCAGCTTGCTGGCGACTTCAATATACAGCCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTGTTGTGTATGCCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAACGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTATTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : CACTCAAATCAACCACCCAAAAAACCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGTTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //