Array 1 237643-237864 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABDO02000004.1 Clostridium botulinum NCTC 2916 gcontig_1106872038282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 237643 28 100.0 36 ............................ GTTGATGAAACAAATATCGAAGATGAATATATTTAT 237707 28 100.0 36 ............................ ATAATTTTATCATAGAAAATGTAATTCTATTTGAAT 237771 28 96.4 38 ........................T... AACAATAGAGGGGCTAAGTTCCTGGTGTGAAGCAAAAT 237837 28 92.9 0 ............C......A........ | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 97.3 37 TTAAATACATCTTATGTTACTGTTCAAC # Left flank : TTATTATACCTGTAAATATAAAATTTTTCTTCTTCCTAGTTAGTTCTTTTAAGTCTTTTTTGTTCTTTAAAAAATAACCTCCCACTACAATTGCTGAAAAAATAGTTGCCCATCCCGTAAATCTAGGTAAGCTTCCCATTAACACCATATACATTACCACTAATAAGGCTACATGAGATTTTTTCATATTACGAAATTTATCCACAATACTCCCTCCATATTTTTATAATATATTTCCTACACAAATATTCTTCTACAGAATTATGGATAATCCTTCAAAAATATAAAATAATATACAATATCTACATAATTACAAAAAACTATTTTATCTATCCCCTTTAAATACTAAAAACCTGTCCTAAAAATAGACAGGTTTTTAAAATTAATCTAATAATTTACATATAAATTATCACAATGCATAGTTTAGTTTTATAAAAATCCCTATGCCATTCTCTAAGGAGTAAGCGATTCACACCAAATCGTAGACTTGGGTTCTCTGC # Right flank : CCATAGTAAAATAGCCATTCCTTATTTTTAAGAATAGCATATAGCCATTGATTTTACAAGGTTCTATAGAAAGTTTTCCAAGTGATTACGTTTTTTAATAAATACATAAAACAAACCTATTCTAAGCCTTATATACCAATAGCTAGAATAGGTTTTAAAATTTGTTACGCGTGGAAAAATTCAATTTATGAAACTCTTTATCCTACTCTCCAAGGAGTAAGCGACTCACACCAAATCTAAGATTTGGGTTCCCTGCTTAAGTACTATATTATTGATATGAAATGAACCATTCCTCCAGATAATAATGCTACTATAGCGCCTATTATAGTTCCAATACCAGCCCCTTTTACATGATGCCATGGATTTCTATATTCTTTATCCATATCCTCTGTACCAGGTATTCTAGTTTTTTTACTATGACAAAAAAGACCTATATCTAGAACAATCATATCATAAATGTTTACTACAAAAAACAAAGTAAATACATAAATGTAGGCTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAATACATCTTATGTTACTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 251899-251081 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABDO02000004.1 Clostridium botulinum NCTC 2916 gcontig_1106872038282, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 251898 30 100.0 36 .............................. TTAAATCGATCAGTAATTAATATGTTTTTATCTCTT 251832 30 100.0 35 .............................. CGTTTTTTTGTTGCAGGTTTTATTAAAAGTAATAG 251767 30 100.0 34 .............................. AATTAAAAACAATAAATTTTCATTAAAGGATAGT 251703 30 100.0 37 .............................. GTTTTAAGTCCTCTCGCTTCTTTTCTTGCAGCTCTTG 251636 30 100.0 36 .............................. AACTGGTAATAATCTAAGATTAAGTATAGAAACTAT 251570 30 100.0 36 .............................. TTTTCTCCTTGTAACACAGGTAATTTCTCTTGATAC 251504 30 100.0 36 .............................. AAGATAAGGCTTTCTGTACCCGTATTAAAATAAGTC 251438 30 100.0 34 .............................. GAGGGAGATAAATATGACAGGAAGGTATGAAATA 251374 30 100.0 36 .............................. ATAATAAAAAGAAATAGTTATATATATATTGGACAT 251308 30 96.7 37 ..........G................... TTGTTTTTATAATCTGGTTCCCAATATTTAAAAGAAA 251241 30 100.0 36 .............................. TTTCTAAAAGTTTTAGTATTAAACCTTTTTTCTTTT 251175 30 96.7 35 ...G.......................... TTATGATATGATTTTATTTGTTTAAGAGTATCTGC 251110 30 96.7 0 ...G.......................... | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.2 36 GTTAAACATTAACATGAGATGTATTTAAAT # Left flank : GAATATTTATGGTGTCAGATATTGTGCGTCCATTATGTAGTTTTTCCAGGTAAATTAAAAAATAAAAGTAATGTAAACTCAATCATATTAGTGGTTTATATAGGATTTTTTATAGAAATTTCTATTTTATAAAATCATCTGGAAAGCTTTCTGGAAAATCTTGATATTTCAATGGGGGTGTGCTATTTTTAATTTTAAGGAATATTGATTTTACAGTGGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACTCAAATTTACAATTTGGTGTGAGTCACTTACTCCTTGGAGAATAAGAGAAGGAGTTTTATAAATTGAATCTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGTCGTTGATATATAAGGCTCAGGATAGGTTTTATTTTATATTTATTAAAAAACGTAATCACTTGGAAACCTTTCTATAAAACCTTGCAAAATCAATGGTTGTATGATATTCTTAAAAACAAGGAATGGCTATTTTACTATG # Right flank : ACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTCTTTTTGGGTTGTTGACTTGTTAGTCTAAAGCTACACCATAAGAAGGTTCATTAACACATGTGGAAGAACAGGTAATAGATACAGCGCTTGCTATTGATATGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTTCTAAGTTGTATCATAACCTAAGTAAATTATAAGAATATATGGTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGACGTCTTAGATTTTTTATTGCATGAGATTGTACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACTTACAATGATAAAGTAGGTCCTGATTTTTATTAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 254928-254636 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABDO02000004.1 Clostridium botulinum NCTC 2916 gcontig_1106872038282, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 254927 30 100.0 36 .............................. TCCTCCATATCTCACATATCCTTTCTAAAACATTTC 254861 30 100.0 34 .............................. GTTCTGATTTCAAATTTATTTACTATCCTTTCTA 254797 30 100.0 36 .............................. AAAGTAAGTTTACTCTAGGTTGTCGAACTGTTCCCA 254731 30 100.0 36 .............................. TACATTTTCATAAATCCAGTTGCCACTTTATTAACA 254665 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : GCATGGCATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCTTCCTAAAATAGGTTCTGTATTAGTTACTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCTGTACAATATTTCTCATAGGACTATTATACGATTAGGTTAAGGAAGTTGTCATTTAGGTAGCTATAAAATCTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTGAAATAAATAAAAGAAAAGAACAAAAACTTTTTCCAATCGACTTTAAGTTGAAAATTTATCGAAATCATTGATATATAAGGGTTTAGGTTAGGTTTTTTATGTAAATTTGAAAATACCCTAATCAGTTGGAAATTTTTATTTATAACCTTGTAAAGTCAATGGTTCTATGATATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : TCATATTCCCATTCATCTTTGCAATCTTTTCTCTTAGTTGAACATTAATATAGATGAAAAGCCACCCTTAATAATTAAATATATGGGTGGCATAGTTGTATTTAATTTATATACGAAACGATTGTAAATAGTTTTGTATGTCTTCTTCAGAAGTATTGAGCAAATCAGTAAGCATCCTTTGAATAGAGTGCAGGGTTTTAATTCTCTCTTCAATTTCGCAGATTTTATTCTTTACCAATCCTTTTAAATTCTCTCCATCCATTTCTTGGCTGAGCATTTTCAGTATTTCTTTGATTTCTTTTAACGAATATCCTAATGATTTAGCATCTTTGATGAATTTAATTTTCACAAGATAATCATCTGTGTAGATTCGATAACCATTGGCTATCCGCTTTGGGGCAGGCAAGATGCCACTATCTTCATAGTAGCGTATAGTTGATGTACTTATCCCAGTTTGCCTTGCTAGTTCACCGCGTGTCATTTTGTTCACTTATATTACC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //