Array 1 24611-25446 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEB01000071.1 Mannheimia haemolytica strain 2436MH isolate swab isolate 1 contig_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 24611 32 93.8 36 C....................C.......... CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 24679 32 93.8 34 C....................C.......... TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG 24745 32 93.8 36 C....................C.......... CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 24813 32 93.8 34 C....................C.......... TGCGATTTTTGGATTTTTCGGGCGATAAATGATA 24879 32 96.9 34 C............................... TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG 24945 32 100.0 35 ................................ TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA 25012 32 100.0 34 ................................ TTTACCGTTTACCGATTGGATTTTAATGCTAGAG 25078 32 100.0 35 ................................ CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC 25145 32 100.0 35 ................................ CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC 25212 32 100.0 37 ................................ AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA 25281 32 100.0 35 ................................ TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT 25348 32 100.0 35 ................................ CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 25415 32 93.8 0 ..........T............T........ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 97.4 35 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : CAGCCACCTACGCGTGGCTGCGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.10,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //