Array 1 6070-3887 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYFE01000034.1 Acinetobacter baumannii UH7907 ctgN77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6069 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 6009 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 5949 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 5889 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 5829 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 5769 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 5709 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 5649 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 5589 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 5529 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 5469 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 5409 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 5349 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 5289 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 5229 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 5169 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 5109 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 5049 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 4989 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 4929 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 4869 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 4809 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 4749 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 4689 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 4629 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 4569 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 4509 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 4449 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 4389 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 4329 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 4269 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 4209 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 4149 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 4089 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 4034 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3974 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3913 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49429-44898 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYFE01000185.1 Acinetobacter baumannii UH7907 ctgN53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49428 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 49368 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 49308 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 49248 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 49188 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 49128 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 49068 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 49008 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 48948 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 48888 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 48828 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 48768 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 48708 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 48648 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 48588 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 48528 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 48468 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 48406 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 48346 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 48286 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 48226 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 48166 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 48106 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 48046 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 47986 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 47926 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 47866 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 47806 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 47746 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 47686 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 47626 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 47566 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 47506 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 47446 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 47386 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 47326 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 47266 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 47206 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 47146 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 47086 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 47026 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 46966 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 46906 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 46846 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 46786 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 46726 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 46666 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 46606 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 46546 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 46486 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 46426 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 46366 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 46306 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 46246 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 46186 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 46126 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 46066 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 46006 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 45946 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 45886 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 45826 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 45766 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 45706 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 45646 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45586 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 45526 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 45466 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 45406 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 45346 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 45286 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 45226 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45166 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 45106 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 45046 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 44986 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 44926 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 76 29 93.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //