Array 1 2496950-2498837 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074147.1 Serratia sp. JSRIV001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2496950 28 100.0 32 ............................ ATTACGATCCGGCAGGTTAGCGATATGCTGTT 2497010 28 100.0 32 ............................ ATTTTGATGGCCATTTGTCCGCCATCGGTTTG 2497070 28 100.0 32 ............................ CACATGCTGAGCCCGAACCTGTTGTTCGCTGC 2497130 28 100.0 33 ............................ CGTCCCGCCTGCGCCTGCGGTGCCGGATGAGAT 2497191 28 100.0 32 ............................ GTAAGACTGGAATACAACGAAGATGCTGAGAA 2497251 28 100.0 32 ............................ TGCGTTGCCGCCCCTCGGCGTAATCCAGCAAT 2497311 28 100.0 32 ............................ ACGTTCGTGCTATCAGCAGACGCCAGCGGCAA 2497371 28 100.0 32 ............................ ATGAGCAGCGCTCACTTGCTGAGAGACTTTAC 2497431 28 100.0 32 ............................ AGCGTCGCACCAGGATGGATTCCGGCCATGAT 2497491 28 100.0 32 ............................ CCAGTTTGAGGGATGCCGTTATCACACTGCGA 2497551 28 100.0 32 ............................ AGCTACGGCAACAACTGATGTGGCACCATTAA 2497611 28 100.0 32 ............................ ACACGATAGAAGAGGCTGAAATCTATGTGGGC 2497671 28 100.0 32 ............................ TCGGTGAACCGTAAGACCATCGGCACGACGTC 2497731 28 100.0 32 ............................ ACGTGGCGAGGGATTATTTGCACCGAAAGAAA 2497791 28 100.0 32 ............................ AGGGGGTGCTTAAACACGGTCGCTTCTTCGAT 2497851 28 100.0 32 ............................ TATTCGATTGAGGCGCAAGGCGCGGCCAGTGA 2497911 28 100.0 32 ............................ TTGGGTCATCACGTAATCGTTGACCATGTCGA 2497971 28 100.0 32 ............................ TGGTGAATCCCTGGCGCTGTTTCGCTTGCGGG 2498031 28 100.0 32 ............................ AAAGAACATCAGCAATCACTCTTTCAGTGGTA 2498091 28 100.0 31 ............................ CGCGGCACTCAGGCACAACGATACGTTTCAA 2498150 28 100.0 32 ............................ AAGTGCCCGGAAAAGCTGCCGCGCCTGGCGGG 2498210 28 100.0 32 ............................ AAGAAAGTAATATCAACAGCGTCGCCGCAGGC 2498270 28 100.0 32 ............................ ATAGCTGGCCGTTTGCATATTGAAAAATGCCC 2498330 28 100.0 32 ............................ ACGATAAAAATAGTTCTCTTTCTACAATGCGG 2498390 28 100.0 32 ............................ TGGTGATGTCGTTAGCCTCTTGTGGCAAAGCC 2498450 28 100.0 32 ............................ TAGCGGATGATGGCAAGACGTGGACACGCATC 2498510 28 100.0 32 ............................ TCCTTCGCTTTGCTCAGGCAGAACACCCCTGG 2498570 28 100.0 32 ............................ TGTTACGTGACGCCCAGGAGGAAGCAAAGCTA 2498630 28 100.0 32 ............................ TGCAAGCGCCGATCTAACTGCGCGTCAGTTAA 2498690 28 100.0 32 ............................ TTTGAACCACAGCCGGATCGTGAACCGGTACA 2498750 28 100.0 32 ............................ TGTTACTCTTCATGATGGGCCTCACCGCTACT 2498810 28 85.7 0 ...............A....T..G...G | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGATAGTAAAGGCAACAATGTGGGTTCAGTGGGGCAAGGTGGGCAAATGTATGCTCGTGTAGCGGAAGACAAAGGAGAGCTGATTGTGAAATGGGGCGCCGGTAGTGAAATGCAATGTACTGTGGGGTATATGCTGATGCCGCAGGCAAAAAACAGTCCCGTTTCGGCGATCCAGGTCTTTGATTCAGTTTGCCAATAGAGAACCGTAGTCTTAGCCATCAATCTGACGGGAGCTATGGCTCTCATCTCCTTTTCCCTCACTGAAACTCTTCCGCACGGTGGTATACAAAAGAGCTGCATTCGTCCCTTGGTAGCTCTGTAATCATCCTGCGAACCAGTATCTATCCCTGATACTCGTAGTGTCCCTCTAGACCCTAATTTTGAAGCCATTCATAACCCATTGATTTTAAAATAAGGATAGTGAGTAGATGAAAAAGGGTTTTCCGGAGGGTTCCAAGGTTATTGTTTAAGTAACAGAGAATTAGCGCTAGGATGTAACA # Right flank : GGTTGGCTCACCGTCAACTTTCCACCCCAAGCTTTTTTTTATTATTAAGCTAACTGATATAAATGATTCATAATTTGTATCTATCTCTATGATTCATCATCAATATAAATTAAATGAAAATCTAACATCAATCACTCTCTACAGTGAGCCTATTATGTTAAAACAACAATATCGCGTTGGTATCTGTCATAGGTAATCATGTCTTGGATGATTTTATGGCATAAAGCAGGGATGTTTTCATTTAATGCAAAATCAATTTTCGCCATCAGATCTAAAAACCATTCTGCATTCAAAGCGTGCCAATCTCTACTACCTGCAGCATTGCAGGATCTTGGTCAACGGCGGCAGGGTGGAGTATGTCACGGATGAAGGTAAGCAATCCTTGTATTGGAACATCCCGATCGCCAATACCACCGCTGTAATGTTGGGGACGGGAACTTCTGTTACTCAAGCGGCAATGAGGGAGTTTGCTAAAGCCGGGGTGCTGGTTGGATTTTGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2507337-2507664 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074147.1 Serratia sp. JSRIV001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2507337 28 100.0 32 ............................ AGGAACGTAGCCAGGAACGCGACGTATCCCCC 2507397 28 100.0 32 ............................ ACCGCCGCCACCGTCTGCTGTGGCCATTTCCT 2507457 28 100.0 32 ............................ CGAACCTTCAAGCACAGCCCAGAGGTCGCAAA 2507517 28 100.0 32 ............................ TTTGATTCTGATGCCGATAGCACGGATGGCCT 2507577 28 92.9 32 ...........A...............G GGTTTACCCCTGAGAAAGTTAGAGCGGCTTTC 2507637 28 71.4 0 .C.....A...CGC...T......A.C. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGTGCTCACGGCCTTTGAGACTTTACCTTGGCGTAAAGGATTACGGGATTACACGGAATGTGGCGAAATTCTGCCAGTACCCGCCAATGTAAAATACCGTACAGTGCGACGAGTGCAGATCAAAAGCAGCGCAGAGAGATTACGTCGTCGTTCTGTTCGCAAGGGATGGGTGACTGAAGAAGAGGCTCGCCTGCGTATTCCTGACGCCGTTGAGAAACGCTCAGCGTTGCCATTTGTTTGTTTAAAAAGTCTATCCAGCGAGCAAACCTTTTTGTTGTTTATCGAACAGGGCAAGATTTGCGATAACGCAACAGGGGGGATATTTAGTGCTTATGGTCTAAGCGCAACAGCAACCATCCCGTGGTTTTAACCCTAATTTAGTGACTGATTCTAACCTATTGATTTTAAAAGTTGGCGTCAGTCATGTTTAGAAAAAGGTTTTTGCGTTAAGTGGCTTGATTCTATTTTATTAACAGTTAGTTACCGCTGGCATGTAACA # Right flank : ATTAACCTGGAAAGGGAGGCGCGTTGAAGGTCTCAATCTTCGCGTTTACGGAAATAATGTCCACAGTGGGGGCAGATCAGCGTGACGTTTTTTTTCACCTTGCTGCGATTTTGCGGCGAACTTTTTGCGCATTCAGGGCAGGTGACATCAACGGGGGCGTCACCGAATAGCTTAAAAGCATCAAAGAAAGACATCTTTTTCACCGGGTAGAGGTAGGAGGAGTTCAGTGTACCTTTATCGCTCGGTGATAGCTCCACATAGATTGGTAAACCACTGGTAGAGACGAAGCTAGCCGCACGCTAAAAAGGGAGTAACAAGTGGGATGACGGGTCAGGGGGAAGAAAAAAGCCCCGCAAAAAATGAGGGGCAAACACAACAACACCAGGGAAATCATTGATGATTAATCTGCTATTACTATATGTTTTTTGAGACGAGAGTTCATCAATAAATTGCTGCATTATTGCAACATTATAGTTAATTAATTTGTATGTATTTGGCTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //