Array 1 3723176-3721278 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040164.1 Salmonella enterica subsp. enterica serovar Infantis strain SPE102 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 3723175 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 3723114 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 3723053 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 3722992 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 3722930 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 3722869 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 3722808 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 3722747 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 3722686 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 3722625 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 3722564 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 3722503 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 3722442 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 3722381 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 3722320 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 3722259 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 3722198 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 3722137 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 3722076 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 3722015 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 3721957 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 3721896 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 3721835 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 3721774 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 3721713 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 3721652 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 3721591 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 3721530 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 3721429 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 3721368 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3721307 29 93.1 0 A...........T................ | A [3721280] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3740647-3739458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040164.1 Salmonella enterica subsp. enterica serovar Infantis strain SPE102 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3740646 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 3740584 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 3740523 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 3740462 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 3740401 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 3740340 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 3740279 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 3740218 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 3740157 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 3740096 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 3740035 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 3739973 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 3739912 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 3739851 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 3739790 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 3739729 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 3739668 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 3739607 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 3739546 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 3739485 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //