Array 1 4709397-4710085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030327.1 Pseudomonas aeruginosa strain AR_458 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4709397 28 96.4 32 .............C.............. ATCCTCGCCGTCCAGGAACAGCGCGGTCAGGT 4709457 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 4709517 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 4709577 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 4709637 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 4709698 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 4709758 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 4709818 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 4709878 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 4709938 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 4709998 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 4710058 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6237662-6238946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030327.1 Pseudomonas aeruginosa strain AR_458 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6237662 28 100.0 32 ............................ GCGGCACAGCGCCTGTTGCGTGAGCGCTCCGC 6237722 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 6237782 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 6237842 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 6237902 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 6237962 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 6238022 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 6238082 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 6238142 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 6238202 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 6238262 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 6238322 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 6238382 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 6238443 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 6238503 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 6238563 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 6238623 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 6238683 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 6238743 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 6238803 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 6238863 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 6238919 28 92.9 0 .........................G.G | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGTAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : GGCGCTGAATTAATCGCCTCCAAATCTCCGATGACCGAATCGCTCATCGAAATCCAATCAATTCCGAAGTTAAAACGCTCGATCAGCGTCTTCTAGCCCTGCGGCGGTAGCCGCAACGCTCATTTCCCGTCATCAAGACGGATTTATCCCGTTATTGGTTGTTGGCGCTGATGGAAAATTGACCCACCCTGCCGATTGAAATTTGACCCAGGGCGGATTGCTGATTTTGTTACCAGCAACTGTGGATAAGTCTACCAGCGCAGCTGCTTTTGAACCCACTCCCTCGCTGTCCCAGTTCAGCTGTTGAAGACCTGCCACATGCAGCCATGCAGCAGGCCGTCGTCACCATGAAATCAGAACGACTCATCGTCCTCCGGTTCCTGGCCGCCCTTACGCTTTCGCTCCCGTGATTTGATCTTGGCCTGGGCCGCCAAGCTACTGTGTTGCAGGCGATAGGACTCGTTACCGGTTTCGACGATGTGGCAGTGGTGGGTCAGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 6247947-6246478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030327.1 Pseudomonas aeruginosa strain AR_458 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6247946 28 100.0 32 ............................ CCCACGCCTCGGCGCCCTGCTCTCCTCATCTC 6247886 28 100.0 32 ............................ TGCAAGTGAAGGTGCGCGCGTTGCTTGCGGAA 6247826 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 6247766 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 6247706 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 6247646 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 6247586 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 6247526 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 6247466 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 6247406 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 6247346 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 6247286 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 6247226 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 6247166 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 6247106 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 6247046 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 6246986 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 6246926 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 6246866 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 6246806 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 6246746 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 6246686 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 6246626 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 6246566 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 6246505 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //