Array 1 108205-106423 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBV01000005.1 Salmonella enterica strain BCW_2531 NODE_5_length_217575_cov_4.4477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108204 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108143 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 108082 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 108021 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107960 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107898 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107837 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107776 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107715 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107654 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107593 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107532 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107471 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107410 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107349 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107288 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107227 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107166 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107104 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107001 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106940 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106879 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106818 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106757 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106696 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106635 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106574 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106513 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106452 29 96.6 0 A............................ | A [106425] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125830-124337 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBV01000005.1 Salmonella enterica strain BCW_2531 NODE_5_length_217575_cov_4.4477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125829 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125768 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125707 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125646 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125585 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125524 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125463 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125402 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125341 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125280 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125219 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125158 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125097 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 125036 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124975 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124914 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124852 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124791 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124730 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124669 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124608 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124547 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124486 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124425 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124364 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //