Array 1 772640-770691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASAM010000001.1 Yersinia kristensenii strain SCPM-O-B-7961 (C-135) 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 772639 28 100.0 32 ............................ TTATCGCGCCGCAGCAGAATCTCAGCGGCAGG 772579 28 100.0 32 ............................ TCATCTAGTGGTCTTATTGCTGCCACCGGTTA 772519 28 100.0 32 ............................ AGCAATTCAGCCCGCAAGCTGGCGGCGGCGGT 772459 28 100.0 32 ............................ TCCCCCAATCTGACCGCGCCAGAAATCAGCAA 772399 28 100.0 32 ............................ CGAGGGCGTGACTGAAAAAGTGTTGGCGGCTA 772339 28 100.0 32 ............................ AACCTGAGCCACGCCAGCAACTACGAGCTGTT 772279 28 100.0 32 ............................ ATTTCCAGCACAACGGCAGCGGTTACCAACTC 772219 28 100.0 32 ............................ AACATATGCGTGATATGGGCAACACCCAGGGA 772159 28 100.0 32 ............................ CCAACTGAAGCGGCGAGACACTCGAAACGCTT 772099 28 100.0 32 ............................ ATCATGTGCATCACCATCATCATGCGGGCGAA 772039 28 100.0 33 ............................ TCTTCGGGGGCGCAATCTAGCGAGGTATAGCTA 771978 28 100.0 32 ............................ ATATCCGAAACATAAGATAAGCAACAGTATTT 771918 28 100.0 32 ............................ ATTCAGACACGGAGTTTTTGAGGGTGATTGGC 771858 28 100.0 32 ............................ AAACGCCCAGGGGTGTACGGCCACGGTCGAGC 771798 28 100.0 32 ............................ AGAATGTCTGGGGCTTCTACACTTCCGGAACG 771738 28 100.0 32 ............................ TGGTACCTAAGCTCCAGAGCATTACTTGCAAG 771678 28 100.0 32 ............................ AATACAAATAATTGTGTGCCGTCAGTTACTGC 771618 28 100.0 32 ............................ ATGGGGGAAGCGTTTTTGCAGCCGGATAAGGT 771558 28 100.0 32 ............................ TTGGATTAATGCCACATTGTTGAACGGGTGGG 771498 28 100.0 32 ............................ GTAACGAGCTGCCAACACAGTGTTATCTTTCC 771438 28 100.0 32 ............................ ATTTCAAGAATTGATCCGAAGTTGGTGTTCCT 771378 28 100.0 32 ............................ AGTCATTGTCCCGCCAGATAATGACAATTTGC 771318 28 100.0 32 ............................ TAAACCGCCATTGCTGAATGCTGAACCGATAA 771258 28 100.0 32 ............................ AGATGAATTAACAGCTAGTTCTACACCCGTGC 771198 28 100.0 32 ............................ ACTGAAGTACTCGAGTGGGTTAACAGTCAAAT 771138 28 100.0 32 ............................ TTGAAGCAATGAATCAGACGATGGCGACCACT 771078 28 100.0 32 ............................ AGCTCATGCCGATGCAGCGGGAAAGGCACTGT 771018 28 100.0 32 ............................ AGATAGAAACCCAGCGCCAAGCTGTAGCAGCT 770958 28 100.0 32 ............................ ACAGTTACTTTGACGCGTTGCAATAAGGACAT 770898 28 100.0 32 ............................ CTCCGTACTGCTGGCATTCGAATCAAGGGAGA 770838 28 100.0 32 ............................ ATTAACCCGTGCTCAATCAGTGCCGCGTCAGT 770778 28 100.0 32 ............................ GGAAAGCTAAAGCGCAACATCATCATCGCTAA 770718 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATAATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : TCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATATTTGATTTTATGTAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGTCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 783566-781137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASAM010000001.1 Yersinia kristensenii strain SCPM-O-B-7961 (C-135) 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 783565 28 100.0 32 ............................ AAAGGGCGGGGGTAATTCAGTGCCTTGGGACC 783505 28 100.0 32 ............................ TTATGCGCGGCGCGACACAATCAACTGATTAA 783445 28 100.0 32 ............................ AGCAATGACGTGCCGGAACCCAATATTGTTCG 783385 28 100.0 32 ............................ GCCATCTTTACCAATGTGCTCAATTACCTGTT 783325 28 100.0 32 ............................ TGCTGCGTGGCGGCTCCGGCGAAATGTGGCAC 783265 28 100.0 32 ............................ TTAAGCCTGTTCAAGCGGCGTTAGATAATTTA 783205 28 100.0 32 ............................ GGCACGACCGGTAATGATTTTGATAACGCATT 783145 28 100.0 32 ............................ AATCGCTGACACAGTGAGAGGCAACCCCGTTT 783085 28 96.4 32 A........................... TGCGGCCTCCGAACCATTAAGCTGTGGCGCTT 783025 28 100.0 32 ............................ ATGCGTATAACCATCACAGCGCCGGACATCGG 782965 28 100.0 32 ............................ GGCTCAAAAACTTGAGCAACTCAACATCAAAA 782905 28 100.0 32 ............................ ACACCCCCCATATCAATCGCCACCCGCACAGT 782845 28 100.0 32 ............................ GTCTGGCAGCGGCACAATATCCACCGCATGGC 782785 28 100.0 32 ............................ GATACACCCGCGAAGAACTCGACAGCATCAGA 782725 28 100.0 32 ............................ TGGTTGGATAAGCGCCTTGTTGGTGATGAGGT 782665 28 100.0 32 ............................ GCTTGCAAGTGGAAGATATCGCCGGCACATCC 782605 28 100.0 32 ............................ ATTCGCGGCCCGGCAAGGTCACCGTCCAGCTT 782545 28 100.0 32 ............................ ACATGGATCAGGTCACCGTCCATATTCACATC 782485 28 100.0 32 ............................ GTTTGATGTGTTGTTCTACGCCAAGGCTGGGG 782425 28 100.0 32 ............................ CTGGCGGCGCATCTGAAACTGGCGCTTATGCA 782365 28 100.0 32 ............................ ATGACGCCAGTGCGAAGAGCTATACCGAACAT 782305 28 100.0 32 ............................ GACTTGTGGCTGGTCTGTCCGGAAACCAGTAT 782245 28 100.0 32 ............................ ACGTGTTCGGGACGCTTTCCTACATATCCAAC 782185 28 100.0 32 ............................ GTAAACACCCCCGGATTACCGACATCAATCAC 782125 28 100.0 32 ............................ CGATTGAGCGCAAAGCATCTTCGGCGCTCATG 782065 28 100.0 32 ............................ TGACTGGTTCCCGCTGGCGCAAAAAGCGAATA 782005 28 100.0 32 ............................ CATACTCGCCGCTTGAGGTTCAGGTAAGTTCT 781945 28 100.0 33 ............................ CGATAAGAGCAACAATTTTTTTATTTTTCTTTT 781884 28 100.0 32 ............................ TCTTTCCCGGCTAATGCCATCTTGATCACCCG 781824 28 100.0 32 ............................ TCTGTGTTCTGCAACCCATGTCACTATCAGTG 781764 28 100.0 32 ............................ ATGCAGCTAGCCACCTTTGCCACAGTCATTTA 781704 28 100.0 32 ............................ CAAATCACGACGAGCCATAACCGGGTATGATG 781644 28 100.0 32 ............................ TAGTTGAGTGAGGGAGAGTCCCGCGCAAATAA 781584 28 100.0 32 ............................ CGTCAACGAATCAAAGCTCTTGAAGATGCACT 781524 28 100.0 32 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATAC 781464 28 100.0 32 ............................ TTGCGCCGCTCATCAATCTCATAATCATCACG 781404 28 100.0 32 ............................ CTTGCCGATGGTGCGTTGCTTTAAGGTCTTGA 781344 28 100.0 32 ............................ TGATCCAGCCGCGCGGGGTTTCATCGCTGACT 781284 28 100.0 32 ............................ GGCTTAGTCAAACTGTTGATTGCCGAGCGCAG 781224 28 100.0 32 ............................ GATGGCCAGCGCGTAGAACTGGAACGGTTGAA 781164 28 78.6 0 .....................AGCATC. | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATCCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATCATCCTCAGCAGAAAAGGCTTCATGACATTTTACCTTAATCTCAACTTGAACCCTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTGATAAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTGGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCGATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //