Array 1 2298-3002 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCT01000075.1 Nocardia arizonensis strain NBRC 108935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2298 30 100.0 39 .............................. ATGAACCCTGACATGGCCGCTCTCATGTTCACGGCCCAG 2367 30 100.0 38 .............................. ATTATCGGTCCGAGTTTCAACAACACACTCGGTGTGCG 2435 30 100.0 38 .............................. ATGTCGTGCAAGTCGACGGCCACCTGTACTTCGGCGTG 2503 30 100.0 38 .............................. TGGGCCGCCAGCAGCGTGCTGGTGACATCCTCACCCCG 2571 30 100.0 38 .............................. TGGCGAGGAACTGAGCGAATCCAGATTTACGGGGAAAA 2639 30 100.0 37 .............................. CGCTCGAGCGGTACCGCGACCTGTTCCCCGCGGTGGT 2706 30 100.0 37 .............................. GCGCGGATGGCCTCGACCTGCCCACGCAGCTGCTCAC 2773 30 100.0 35 .............................. ATGAACTGCTCTACGACGATCCGCCACGGGATCTG 2838 30 100.0 38 .............................. GGCTACCGGGTCGAGCGCACCTACGTCCCCTATCCGGC 2906 30 100.0 37 .............................. TGCTCTTTTGGGCGCTGCCGTTGATCGTGGTGCGCCC 2973 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 38 GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Left flank : GTGCAATACGAGTCCGCACCACGACTAGGCTGGTCGGTACAACTCGACGTCAGGTGCGCCGTTCGAGGCGAACCAGTTCTGCAGTTCCGGTCCGTCCAGTAGGTGTGGCGAATCGACACCTATATCGACAGATCCTATGACCAGGCCACTGGAACCGGTGACATCAACGCCTGTCAGCCGCGCACGCGAGACGCGGCAAGAAGTGCCGATACTCGCCGGCATCTTTCAGGAGAGCGGGCGGACCTGGCTCGTCGACAGTCTTTCTACGACTTGAGTTAACAAACAACCGAAGGCAGATGCTGGCGGCGCGCTGCCGCCGTGAAACAAACCGAGTTGTACGCTTCAATCGAGCCCCCAACACTCAATGTCCGACGACCCAATGATCCCCTCGTAGACTTTGCAGCGACACGCCGAGAATGTGAACACTACCGGAGGTGCACTGCAAACTTGCCCACTTCACAGTCACGAACGTGCACTCTGAACAGGATCTTTACCGTGGG # Right flank : AAACTCGACGGCAAGACCGACGCCACGGCGGGCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 37-404 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCT01000049.1 Nocardia arizonensis strain NBRC 108935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 37 30 100.0 38 .............................. ACAAATATCCGCCCGGGTGGCATCCCAATGATCGTGGA 105 30 96.7 39 ......G....................... CCGCTCGGCGTGGGTACTGACCACGACAGGGCGCGCCGT 174 30 100.0 37 .............................. CTCACAGGCGTACCCCGGCGATGCGGGCGAGCCCACG 241 30 100.0 33 .............................. TAGCAGAACGTCGCACCGGAACCGAGGTGTCGC 304 30 100.0 38 .............................. GCGGTGGCGAGGGTGAGTTCGACTGGATCCGGGACCGC TG [318] 374 30 93.3 0 A............................A | C [383] ========== ====== ====== ====== ============================== ======================================= ================== 6 30 98.3 37 GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Left flank : GATTGATGTCCACCACGGCCTCCGGGGGAGCAACTTG # Right flank : ACCCACACAAGCCATAGAAACCCTTCTCCGTGCCCCCGCGGTGCCCGGGCGCTACCAAGAACCCCGCTAGGCGGCTGTATAATTAGGTGTCCAGCGCCGCGCCAGGAATTGTTACGGGTTGGAACGCTGGCTGTTGCGCGAACAACAGCCAGCTTCTCGTTGTGCGCTATCGAGAGTGCAGGAACACGACGAGAAGTGCCAGCACACATGCTGGGCACCCAAGTGTAATCTCGGCGGCGATTCGGCCGGTCGCCGAGCTTCTCCTATTACGTTGCTTCCCCATTCCTTCCTTTCATACGAGGAGCGACGCGAGAACCTTGCGCTTCTCGCGCCTGACGTCGCTGAACTCCTGATCGCATCTCGACCCTTTTCCTTTGGGCGGCAGAAGGGAACAAGGATGCCTTCGATCAGGCTCGTGCACCGTTTCCAGCGCTTCGGTGCACGTTCCCTCCGAGGGGCGATGATGTCTTCCGGCATGAGGGCGCCATACCTTCACGCAC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 11150-9303 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCT01000049.1 Nocardia arizonensis strain NBRC 108935, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 11149 30 100.0 36 .............................. TCCACTCGATGTTGAGGTCGCCGTGCACGTACCCCT 11083 30 100.0 36 .............................. TTCGGCGGGGTCGTCTGTGGCGATCCGGCATTACAT 11017 30 100.0 40 .............................. GCGGCAACCGATTGCGGATCGCGCGCATCGACCACGACGA 10947 30 100.0 38 .............................. CAGACCGACCGACCAGAATCCAGGAGCGACCAGATGCC 10879 30 100.0 39 .............................. ACAAGCCCGGCAGAGGGCGTTTCCCCAGACCAGACGGCA 10810 30 100.0 37 .............................. GGGATGCCGGACGATTGCGTATCTGCGTCTTCACCCC 10743 30 100.0 42 .............................. GTGCTTGCCCCCTGCCGCTGCACTCGTATACCGGGAGTAGAC 10671 30 100.0 39 .............................. ACCTCCCGCCACTCGGTGACGTAGCGGCGCATCAACCGA 10602 30 100.0 37 .............................. CCGACCTCCCCGCCACCGCCCACACGCCCGCCTCGGA 10535 30 100.0 37 .............................. CCGGGGGGGTGGAGACTGCCCGGTATCGGTGCTGCAT 10468 30 100.0 35 .............................. AGGACCGGACCCATGTTCGTGCAAACCAAATCCCC 10403 30 100.0 37 .............................. CCGCCGCCGTCATCCAGGGTGCTGCGGTGCTCAAACT 10336 30 100.0 35 .............................. GGACAGGCCGATCCATCCGAGGACACCGGCGTAGC 10271 30 100.0 38 .............................. ACTGGTTGCAGACGAGTCGATCGGCGCGCCCGCGTTCG 10203 30 100.0 37 .............................. TCATGAAGCACCTGCGGGAGTAGCTGGCCCAACTCGT 10136 30 100.0 35 .............................. CACGGCGCGATCTCTGGCGAACTACCTCCAGAACC 10071 30 100.0 38 .............................. GTACTTGCTGGCACTGCCGCGCTCGGTGTCGATGACGC 10003 30 100.0 38 .............................. CGGGTGCGCTCATGCCGCACCGTCCTCGGTCAGGACCT 9935 30 100.0 36 .............................. CTTCCTCGGACATCCGGTAGGCACGAGCCACCCCGG 9869 30 96.7 36 .........T.................... GCGGGACCGGGAACCCCTCGTCGTCCACGACGAACT 9803 30 100.0 38 .............................. GGGTGCCCGGTGAACTTCGCCGAGTCCCGCGTCATGGC 9735 30 100.0 35 .............................. CTGGCCGAGTGGCGGCGCGGCCAGCTGCGCGACGC 9670 30 100.0 36 .............................. TTCATTGTCTCGCAACCTATCTCGTCTCGCCTCCCT 9604 30 100.0 39 .............................. CGGGGGCTATCGGCGGTACCGGAGTGGTCATCTTCGGCT 9535 30 100.0 37 .............................. TCGCCACGGTGCGGTTCGCGATCGAACGGTGCTTCGC 9468 30 100.0 38 .............................. GTCCTCGCCGAACTGGACGGCCGCGCCGACCGCGACCG 9400 30 100.0 38 .............................. GAGACCGTGAATTCTCTGGTGGTGTGGTCGCGCCAGAT 9332 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 28 30 99.9 37 GTTGCCAACCCTCGCAGGGGCGATGAGGAC # Left flank : GGCCAGCCCACCCTGCGCCAACGCCTCCGCCTGGGAATCCTGGCCGCGCTCGACCAGCGCATCTCCATGCGCTACACCCTCACCGGCATGGCACCCGAGGACACCGCCGACTACATCCGCCACCACTGCCGCATAGCCGGCCGCCAAGACACCCTGTTCAGCGACGACGCAATCGGGTTGATCCACAACGCATCCCGCGGACACCCCCGCGCGGTCAACAACCTCGCCGTCCACGCTCTCACCGCCGCGTTCGCCGCCGGCAACGCCATCGTCGACGAGAAATCCGCCCGCATCGCCATCACCGAAACCGGCAACGACTGACCCACACCACCACCAGGTCGACGACCCACACCGTCACCACACCGACCACGGCCTCGCTCACCCAGCCGAGCGAGGCCGTTCCCATCCCCTCATCATCGGCACCACCAATGACGCCAACATCGGCAAACTCAGCGGCGGCCAACAGTCGAGCACGTACGCGCCTTTCTGGCCGATCCTGT # Right flank : CCCACAGTAAAGCTGCTGGTTGCAGCATCGCGGGATGGGTATTTTGGTTGTATTTTGCAGCAGACTGTCGGTAGTGCAGTGGTGTTCGGCGTGTCGCTGCAATGATCTTGCCGTCAGATGATGGTGGATGGGGCGGATTGGGTTGTTCCCCAGGATTCGCGGCGGGGTGTTGTTCCGGGTGGGTAGGTGTAGACGAGGACACTGTCGTAGCTGGGGTCGATCGCGGTTTCGATGGCGGTTCGGAAGCGTCGGTATTGGGCAGGGCTGAGCGAACCTTCGAACACGCTGCGTTGGACGTGGTGCAAATATTGGCGGCAGGTTCTGAGTACCACGGGGTTTCGTTCGACTGCGGTGTCGTAGACGACGATGACGTACATGGTCCTACCACCAGATCCGGAATGGTGTGTAGGAAGTTTGTTCGAGTGAGGTGCGGGTGAGTTTGAGTGCTTCGAGGTAGAGCAGTTCTTCGTAGGCGACTTTGCGCTTGAGGCTGCGGTGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCAACCCTCGCAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 14467-15227 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCT01000049.1 Nocardia arizonensis strain NBRC 108935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 14467 30 100.0 35 .............................. GTGGGCAGCATCAGTGGGGCACCGTTCATACCCGG 14532 30 100.0 38 .............................. AGGATCACCCCGGTCTACGCCGCCGATCGGCAGGCCCC 14600 30 100.0 41 .............................. CTGAAGTACCGCAGGTCTTGGAGGGACAGACGGTCGGGCAT 14671 30 100.0 35 .............................. CTGATGCCGGGCAGGATGTGGCCGGACAGCCACGG 14736 30 100.0 37 .............................. CGGCGTGGGGGCGCGGCGAGGACCCCCGACTACTGTT 14803 30 100.0 35 .............................. GCGTCCGGCAAGCCTCTGCAATTCGCGGCCGACGC 14868 30 100.0 35 .............................. GACGAGTAGCCCTGGACAGGTTCCCTGAGAGCCTT 14933 30 100.0 37 .............................. CCGTCCAGCAGTCGATGGCCTGGTCGGACTGGCGCAG 15000 30 100.0 36 .............................. TGGCTCGGTGAGGTGGATGACCGAGAGCTGCGTCAC 15066 30 100.0 37 .............................. GCGAAGCGAGTGTGCTTGCGGTAGTTGGCGGCCTCGT 15133 30 100.0 36 .............................. AGGTCGGACCGCTGAGCGGGTCGGCGGCTTCGGCCG 15199 29 93.3 0 ..........-..T................ | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 99.4 37 GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Left flank : GACCGCGATCCGGCGATGACCGAGCCCGCCCGCACGGGCGGCGAGCACGGCCCAGATCACCGCCGCCCCATATGCCCTGCGCAGCAGCAAAGTCACCGGCAACAACACATGCGTCACCCCACAGCCCCGGCAACGAGCGCGCCGAGGCCGCACCCGCTCACCGACCGGCCCGACCCGCCGCGGTCGTGCCCACCCCCACCGGGCCAACACCCCGACAACACATGCCGGGCACCGGATCTCACCCGCCACCAGCCGTGTCTCGACGCGAACCAGATCGACCTCTACCGTGACCACCAGTGCCTCCGAGCACTACGCACGGCACCCCGCCACAGGATCCGCCAAGACCAAGCCGGGGTGCCGTGCACCCTGCAATGCTCGTCACCCTGACGGTGGAGACCACCACGATCAACTCGAACCCGACGCCGAACATCACATCGGCAACACCAACGACGACTCAGCCCCCGTAATCGTCATCCCCAATGACGCTCAACACTCGACGC # Right flank : CCGGTCTGCCGACAGGAAGCTGCCAAGAAATACGCTGGGCACTGGCAGCGTCGTCCCTGCGCAACGTGCGCTCAACGGTCGGCGCTCCTCGAAACGCGGCTGAACTATCAGCTTGAGCCATGCTCGAACAGACGTCTTCGGCAGATGGGACCGCGCCCGTAACCGCGGTCTCCCGACCCCAGGTAATGACCGCCATTACGCGGCCGTGCCCTGGCGTAAGCCAACGGCGTGGTTGTTGGACGGTCTCAGTCGTCTCGGATGACCGGTCCGCGGAACCAGCAGTAGGGTAGACGGCTTTCGGGGTAATTGAGGTAGAGATTGTATGCGGCACGGGTGCGGTGCCCGATTCCGTCGGTCTTGCTGGGTTCGATCAAATATTCGACGGCGAGTGGGGTGACGGATGTGGCGGGCCAGGTGGTCAGTAGTTCGTCCTCGGTGTCGTAGATATCGATCCACGATGTCGTGCCGTCCGGCAGTGGAGAGTCGGTGATTTCGAATCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //