Array 1 1738091-1738521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013131.1 Porphyromonas gingivalis A7A1-28 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1738091 36 100.0 29 .................................... AAAAGCAAAAACCAACCTACTTAATACCA 1738156 36 100.0 30 .................................... AAGAAGAAAAAGTAAGTAACCCTTTCACAA 1738222 36 100.0 30 .................................... TTATATTCGTGTAATTCTTTCTACTGATAG 1738288 36 100.0 30 .................................... TACACTTCTAAAAGATATAGAGTCTTTATT 1738354 36 100.0 30 .................................... CAAGCCCTGTATAGAGACGCGGAGCGTTCC 1738420 36 100.0 30 .................................... ATAGTTAAGGGAGATTTTCTCACCCCCATA 1738486 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGATCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCTATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAAGGAAAGCACTCCCCGACACGAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGCGAAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1964876-1958895 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013131.1 Porphyromonas gingivalis A7A1-28 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================== ================== 1964875 30 96.7 38 A............................. AATCGGAACCTGCTGTCGCACGCCTCATACGCCCGAAT 1964807 30 100.0 37 .............................. TTTGCGAGGATTCTTTCTTTCAGTTCTGAAAAATTAT 1964740 30 100.0 38 .............................. AGGCTTGTTATAATAATAGCGGTTGTATTCTTTCTTAT 1964672 30 100.0 36 .............................. CCTGCTCGAAAAGCGGCTGGTTTTCCGTCGCAAGCT 1964606 30 100.0 36 .............................. CATTTGCTGTCTTTACCCCGGCCTCCAGATGCCTTA 1964540 30 100.0 35 .............................. CTTAAAGAAAGAATCTTGCTGTTTATCTCGCACGT 1964475 30 100.0 37 .............................. AATATGGCTTCGGAGCTTGTAAGCCACGTTTTTTCTA 1964408 30 100.0 35 .............................. TCTCGCACGTTGGGGTCAGCAAATCCACATTTGAG 1964343 30 100.0 35 .............................. AGGGTGTAAATCTTCCCGTCATCCGGGAGTAGACT 1964278 30 100.0 36 .............................. GCATCGGGGATCAGGAATACCCCGCATATCAGACGA 1964212 30 100.0 37 .............................. GCAACAGGGAAGTGGAAAAAAGCAGACGGCTCCGACT 1964145 30 100.0 37 .............................. CGGAAGGAGAAAAAAATAATCCTGTCCGAATTTTTGC 1964078 30 100.0 37 .............................. CGAGACCTGTCCGGGCGCGCCGGCGTGGCGCGAGCGT 1964011 30 100.0 35 .............................. GCAGCTCCCATCGCATTGTTGAACGAGGTGATTTC 1963946 30 100.0 35 .............................. GGCCGAAATCCGCACTCAAACCTGGGCGCATAAAA 1963881 30 100.0 36 .............................. CATGATCGCTAAGTGGGATCTGGACAAAACGCTCGT 1963815 30 100.0 35 .............................. ATTCTGATCGACAACGGGCACGGCATCAACACGCC 1963750 30 100.0 35 .............................. ACATCATCACTTCTTAACTTCGTACCGGTTCCCTT 1963685 30 100.0 37 .............................. TCTGAAATAGCATGGAGGGAACCAATAGAGTTTTATC 1963618 30 100.0 37 .............................. CTATTCGTGTTCACGTAATAGCAAAGAAGGAGAAGAA 1963551 30 100.0 36 .............................. TAGAACCTCTGTCCGACGCAGCTTCAAACTTACTAC 1963485 30 100.0 37 .............................. TAGAACAGTACATTCCGAATCTCTTCCGTACTGACTC 1963418 30 100.0 39 .............................. TATTTAAGGAGAACTATCGAAGACTGGATTATATTGGGT 1963349 30 100.0 35 .............................. AAAGTTGTAATATTGACTCTTGATGCCGAAACTAA 1963284 30 100.0 36 .............................. CAACCAGACTTTACTTCTGAAAGCGGAAGTATGTAC 1963218 30 100.0 35 .............................. ATCGTCAGCATAGTCGCTACGATCTTTGTTGCTGT 1963153 30 100.0 35 .............................. TCTTATTTCAAATTGGGATAAGGTTATGAACTTTC 1963088 30 100.0 35 .............................. GCTTGTGCTGTTTTTATAATCTAGTTCTTCAAATG 1963023 30 100.0 36 .............................. CTTAAATCCTCTTGGAATTATTCAAACAATAACTCC 1962957 30 100.0 35 .............................. TGGGGTAGAGTATTTGCCATAGGTGCTATTGCCTA 1962892 30 100.0 37 .............................. TATGAAAACAAGAAAGGACTTCTCAGCCATGAGTTTG 1962825 30 100.0 35 .............................. TTGCTTTGCCACTTTTATTAAAGAGAATGGAAGTC 1962760 30 100.0 35 .............................. GACCAATACTCGTAGAATTTGGAAACCATATCCCT 1962695 30 100.0 37 .............................. TGAGAAGAGAAATCAAATTTAGAGCAAAACCACCAAC 1962628 30 100.0 37 .............................. ATATGAATCTAACGGACTTGTTTACCCATTGTCCGAT 1962561 30 100.0 34 .............................. GCCGAAGAGAGCTAAAGCGATCGATAAAGAATTT 1962497 30 100.0 37 .............................. TTATAATGGCTTACCTCCCCATCTATCTGTTTTTGCA 1962430 30 100.0 36 .............................. AGTCATTGATTACACCTCCTTTCCTTTTTGGCCATA 1962364 30 100.0 38 .............................. TGTGTATAACAATCGATTCGTGTTCCCGCTTCCCCCAA 1962296 30 100.0 37 .............................. AACAATTGGCTATGTTGGAGGGAGATCATGCTTCTAT 1962229 30 100.0 38 .............................. TGTTGGGTCACAAGAGCGGAAAAAGGAGTAACACCCAC 1962161 30 100.0 37 .............................. CCGCATCAGTAGCTTTGCGTCCGCATATCTCGCAGAA 1962094 30 100.0 35 .............................. CAAATCGCTCTTGCTTTGCTCTGCCCCTCTCCCTG 1962029 30 100.0 36 .............................. CGTACATGATGCCCTGCTGGAGGCAGGGTTCACGCT 1961963 30 100.0 37 .............................. CCACAGACCAGTATTGCGGTATCGCCCCCCGTCGCTC 1961896 30 100.0 35 .............................. GGCGCGCTCGATCTTGCTTTCGAAGTCGGCTATTC 1961831 30 100.0 36 .............................. CTCACGAAAACAGAAGGAGGTCAGTCATGATACGTA 1961765 30 100.0 35 .............................. GGGTTGTAGTTTGTGTTGCCATATTTTCTACTGAT 1961700 30 100.0 37 .............................. CCGAGTCGATATACTCGACAAAAACGGGCGCCCGTCC 1961633 30 100.0 36 .............................. TCATCACTTGACGTAGTTTCGTGAGAATTTCGTGGG 1961567 30 100.0 36 .............................. TTTCTTTTGCGCGCGGAATAGTGGACTTTTGCAGCA 1961501 30 100.0 36 .............................. TTGACCGCATCAACGACCACAACCCCGACAACGTCG 1961435 30 100.0 35 .............................. CCCCGCGGCCGCGCCCGCCCCTTTGCAGCTGAGCA 1961370 30 100.0 36 .............................. ACACCCTCGAGGAGATTAACGCCCTGCGACTGGATA 1961304 30 100.0 37 .............................. TACGATATGCGCGACGCTGTAATCAAGAAATTAGAAG 1961237 30 100.0 36 .............................. CCGGCGACGAACTCGCCGTCAAGGTGTCTAATAAAG 1961171 30 100.0 36 .............................. TTGATCTTTGTTTGCTCGTTCATAATCTTAACATAT 1961105 30 100.0 37 .............................. TATGCGCTGATGTTGTGTCGCTTTAATGATGGGAAGT 1961038 30 100.0 38 .............................. TGCCCAGAGCTATAACGAAGCTTACAAAAACTCAACTC 1960970 30 100.0 35 .............................. TTAATAAAGGGAACGTCATACAAGGCCGTACTAAT 1960905 30 100.0 36 .............................. GCGTGAAACGAATGCGGACGAAATTACCGCAAAATT 1960839 30 100.0 36 .............................. ACAGCTGCAGAACGCCCTCGCACAGATGCGTATCGA 1960773 30 100.0 37 .............................. TTCAGTAACTCAACGAAACGAATGTGATCCAAGGCGA 1960706 30 100.0 101 .............................. GCTGAAAAAGTCCACAGCGGCATCGGAGGGCTTTTAACCTTTTTGATCTATGCAATCCCGATTGGCTGAAAAAGTCCACAGCGGCATCGGAGGCCGCCTGT 1960575 30 100.0 36 .............................. GAGTTCATTAGTACAAGTGGGACCACTTAAAAAGTA 1960509 30 100.0 37 .............................. TGACTAATGATGCTATTTTTACTAAAGGTTGTATTTA 1960442 30 100.0 37 .............................. AATAAGTCCTGGAAGAGGGTGTAGGAATTGGAGATGG 1960375 30 100.0 35 .............................. GCAAATAATCCTAATTTAGAAGGGAACTTAGAGGT 1960310 30 100.0 35 .............................. TTGATGAAAATCTTCATCGTCAAGTATGCGCTGTT 1960245 30 100.0 36 .............................. CCACCTGTTCCGCCAGATGGTGAATCTTGGGTACAT 1960179 30 100.0 36 .............................. ATATGACTTCCTAGGAGAGGAATCTATAGATAACGA 1960113 30 100.0 36 .............................. GCTTCGTCGAGGGATGGAACGAATCCCCCCTACAAC 1960047 30 100.0 38 .............................. TTCCAGATACTCGAGCGTGTCAAGCTGTTCACGGAGTT 1959979 30 100.0 37 .............................. TGTCGCGTCCAATTGTATTATACAAGGCAATGGCAAT 1959912 30 100.0 37 .............................. TTTGACACAAGCCCAATTTCCGCGCGGTAGCGGTGTT 1959845 30 100.0 36 .............................. TCGATCCATACTTAAAAAGAATACCCCTGCGGAGGA 1959779 30 100.0 36 .............................. TGCGTTTTTGTCCCGGACATAAACAAGCGAAAGTCC 1959713 30 100.0 36 .............................. CGAAGTGGTGGCGCATAAGGGGCTTCGGGATATGCT 1959647 30 100.0 36 .............................. GGGCATAAAAGGCACCCTGTATATCGCCTTTACCGA 1959581 30 100.0 37 .............................. AAAATAGATATGCTTAAGCGCAGAGCGTCCGAGAAAT 1959514 30 100.0 36 .............................. AAAGGGATGTTCGACACTGTAGCAGAAAGAAAGGAT 1959448 30 100.0 36 .............................. TCGATCCGCAAAGCAAGTGCTCTGTCTACTCCTCTT 1959382 30 100.0 36 .............................. GAAATATGTCGGGCGGTGTTCAGGGCGGTATTCCCA 1959316 30 100.0 35 .............................. GAAGACACAAAAAACACGCAAATCAGCGCATCATA 1959251 30 100.0 33 .............................. GAGCGCGATGAGACAACAGCGCAAGAAAAAAAA 1959188 30 100.0 36 .............................. ATCGTCCGCTGAGTTCGTTTCCTGTGTCTTGGCTCA 1959122 30 100.0 36 .............................. TAGACGACTTCTATAGCGACTGGGATATATTAGACC 1959056 30 100.0 36 .............................. ACAGGGAAAACAATCAGAAAAATAAAACGTGAAAAC 1958990 30 100.0 36 .............................. TTCTTTTTTGTTTTTGTTTACGCCAGCTTTATCTAT 1958924 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================================================================================== ================== 90 30 100.0 37 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TCGGGAGATACCTCTTCCATCTTCAGCCCCAAGAATCGGGAAAAGGTGATCGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCCTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTTCCTATTATACAATGAATTAACAAACAAAATACACACCAATTGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTTAAACCCAAAATTCAGATATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGTATTTGCTCGAGTCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 3 1998549-1999186 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013131.1 Porphyromonas gingivalis A7A1-28 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1998549 37 100.0 35 ..................................... ATTTTGACGCATTAAATCTTTTAAGATTTGATTAA 1998621 37 100.0 37 ..................................... CCATAATGCACACATTATAAGACCGCCTAATTCTTTT 1998695 37 100.0 40 ..................................... TTTTCTATTACCCAAGGATTATCTACCTCTTTCATGGAGG 1998772 37 100.0 37 ..................................... TTCATAGGTTGAAGAAAATACATTAGGTACTTTCCTA 1998846 37 100.0 37 ..................................... TCCATAAAGAGTGATGTTAAGGATGTCACTACTGCCG 1998920 37 100.0 41 ..................................... TTTAATAGTAGCACCTTCAAGAATCAACTTTTGAATAACCT 1998998 37 100.0 38 ..................................... TTTTTCATATTCATCTCCAGCATTAAATTCAATTTGTT 1999073 37 100.0 38 ..................................... CTTATCGTTTTCTAGATTAAATAACCTCTCTATTTCTT 1999148 37 100.0 0 ..................................... | TC [1999183] ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 38 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAACCTCACATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAACGGTGTCTTTCTCTATTTTTCGAAAATCTAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACAGAAAATCAGGTAATCTCATTGTATATCAATGAGATATAATCAGCTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGTA # Right flank : CTGATTACCGAGGGTTAGAACGAATGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGCATGCCCGGGCTTCTTGTGCTCTATGGCATGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAAGCTCCTTTGTATTCACACATTCACACATCTACGAGGATGCCAAACGCACAAGCATGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCGATGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTCTCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCAGAAAACACGCGCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGCAAAGGAAAGTTCGGTCGTTTTCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //