Array 1 76633-77594 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJQU01000001.1 Staphylococcus pseudintermedius strain MAD658 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 76633 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 76705 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 76775 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 76847 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 76920 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 76990 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 77063 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 77134 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 77205 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 77277 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 77349 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 77420 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 77489 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 77560 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 99.0 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 86557-86318 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJQU01000001.1 Staphylococcus pseudintermedius strain MAD658 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 86556 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 86487 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 86413 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [86405] 86341 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : TTAGATAGCTCTTTAAAGCCTATCAAATCAATAGTTCAAAGGCAAAATTTACTGTCAAAAATAGTGACAAATCACTTGTACTATAAGTGCAGAATGTCACATTTTTTGACAACTAAATTTCAGCTATACTCTAGTTATATTATACTATATTTCCCCATGCCTAAGCTTGTTTTCATACCTGATCCAGAAAATTCGCCAAACTTCAATAAAAAATGAGTTAGTTGTAGAAAAGGTAAGGGTCCTTTAATTTTAAACACTATTTCTCCCGTAAATGAAGGGATTTTAACTTTTTCTAAGTTAAATCGTGTACTTTTCAATTTATAGTCAACAATATTAATATTTTTTTCTAAAAAATCTAATGTTTCTTTATCGTACATTTTATATTCTTCGAAAAAAGCATCAAATTGTATCATAATACTTCTAAAGAAACGTTTAACCTCAGGAAAAATCATGTAATTACTCTGATATTTAAAAGACATAGGTGTCTGTATATTAATTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 21749-23292 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJQU01000008.1 Staphylococcus pseudintermedius strain MAD658 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 21749 36 100.0 29 .................................... GATGAACCTAAAAAGTCATCAATGTTTGA 21814 36 100.0 29 .................................... ATATTCACGCAATTTATGCCACTCTTTCA 21879 36 100.0 29 .................................... TTGAAACAGAAACACTTAACGATTCCGAT 21944 36 100.0 30 .................................... TGCAGGAATCGGTTTTGTCCTGTATGCGCG 22010 36 100.0 30 .................................... TATTTAAATTACGTTTCGCACGTTCAATCT 22076 36 100.0 29 .................................... AAGTCATCAGCCGAAAACGCTTCTGATGT 22141 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 22206 36 100.0 29 .................................... AATGTGCTTTTATACGTTGTTATCAGTTG 22271 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 22336 36 100.0 30 .................................... AGAATACGCCGTCGTCTTACCGCTTGCAGT 22402 36 100.0 29 .................................... CATTAACTGCTTTGTCAAACTCACTAATT 22467 36 100.0 30 .................................... GGAAAATGTGGTAATGAAGGAGGATTTTGA 22533 36 100.0 30 .................................... AGAGAAGAAATTGTGGCAATACGGTATTGT 22599 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 22666 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 22731 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 22797 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 22863 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 22929 36 97.2 29 ............................A....... GGACAACAACAAGATATTGCTCAAGCCTA 22994 36 97.2 30 ............................A....... TTTCCTTCGTGATTTCTTCTTCTACTTCGA 23060 36 97.2 29 ............................A....... GCTAAAAGTCAATGTTACTTCATTCCTTA 23125 36 97.2 29 ............................A....... TCACAAACCGTTTATGAAAAAAATACATC 23190 36 97.2 30 ............................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 23256 35 88.9 0 ..........................-.CA.C.... | TC [23289] ========== ====== ====== ====== ==================================== =============================== ================== 24 36 98.7 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //