Array 1 4796542-4794621 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021111.1 Bordetella genomosp. 13 strain AU7206 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4796541 29 100.0 32 ............................. AAGAAGAGGATGTCATTGAATTCATTATGGAT 4796480 29 100.0 32 ............................. GTAGGCGTGCGCATGGTTATTCTTCGGTCAAC 4796419 29 100.0 32 ............................. GGGAGACGAGGTTTTCAAGGTGCCGTGCCAGC 4796358 29 100.0 32 ............................. TTATTTTGGTCATGGTGTCCAGTCTCAGAAAG 4796297 29 100.0 32 ............................. ATGGATGATCCGCACGGCGACAAAACCGGAAA 4796236 29 100.0 32 ............................. GTCGGCGTTCGCATGGTCAGCCTTCTATCAAC 4796175 29 100.0 32 ............................. GCCAAACCTGCCGCCTGATTCTTTGGAATGAA 4796114 29 100.0 32 ............................. GTACCGTCCGGCTTCCGATAGCCGACCACGTG 4796053 29 100.0 32 ............................. TCACGCTGGCGCGACACGGTTGCCCCCAACGC 4795992 29 100.0 32 ............................. TGATGTAGAATTTTGATGCCCTCGGCAGACGT 4795931 29 100.0 32 ............................. CCGCCTTTGCCGCCGCCTACGGCCTGGACACC 4795870 29 100.0 32 ............................. ACCATCGCGCACTGGGTGCAGGCGTCGCGCCA 4795809 29 100.0 32 ............................. TGACCATGGATCGCGCCGGGCGTGAAGCCCAG 4795748 29 100.0 32 ............................. ATATTGATGACGTCCTCGCGATCCTCGTTGGT 4795687 29 100.0 32 ............................. CGTGCTGGCTGGGTCCCGCAGGTCGCCCCACT 4795626 29 100.0 32 ............................. CACGTCACGTGATGCAGGCGCGCCAGCCGGGC 4795565 29 96.6 32 .........................G... GCGCTCCGTCACACCATGGACGTCCGTCCGTC 4795504 29 100.0 32 ............................. ATTTCGGCGAGCGCGAGGTCACGCTGACCGTG 4795443 29 100.0 32 ............................. AACACCTTACCCATGGCGACACGCGCGGCGAT 4795382 29 100.0 32 ............................. TTCCGGCTGCAGGTGGCGAGCTCGGGCACCGA 4795321 29 100.0 32 ............................. ACACCGCAGTGCGGGCGCCTGCTCGCCGCCCA 4795260 29 100.0 32 ............................. TTTGAGGCCGCGCTGACCGCGGCGCTCCCGAC 4795199 29 100.0 32 ............................. GCGCCGGACGGCCGCAACCTCATCGACATGGA 4795138 29 100.0 32 ............................. GCGCCATCGATGCGCATGATGGGCAGGTTTGC 4795077 29 100.0 32 ............................. CTGGCGGGCGGCGGTCATGCCTTCGAGGTCAT 4795016 29 100.0 32 ............................. CCTCAGCCCCTGGCTCGCGACGTCACGCTGCC 4794955 29 100.0 33 ............................. AAAACGACGGGCACGGGCCGGTTTCGGACTGGA 4794893 29 100.0 32 ............................. GATGTCGCACGGTTCAGGGCTGATAGCGGAGG 4794832 29 100.0 32 ............................. ACGGAGATACGGCCGGCGACGGCGCGCCGCAA 4794771 29 96.6 32 ...........................T. GTCAGCGGAGGGGCTTGGTACAGGGCTGCCGC 4794710 29 100.0 32 ............................. CAGTGTTTCCAATCAGGGTGATCTGCGTGCCG 4794649 29 93.1 0 ...................A...T..... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.6 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : ACTTTGGAGATCGGCTCGACCCCGTGAACCTTCCGGTGCCGGTCGATATAGGTGTTCACCACTTCAACTTGCGGTCGAGTTTCGCCGGCGCGAAAAGAGCACTGGCCGTGCGTCGGATGTCGTTGGCCCGGCGCAGTTCGCGATTCTCCCGCTCCAGTTCCTTGATTCGTTCCCGCTCGCCGGTGGTGACGCCTTCGCGCTGTCCGCTGTCGGCCTCGTGGCGCTTGCCGCAGGTCAGCAGCTTCTGGGCCGAGCAGCCAGTCTTGGGCGCGATGGACTCGACCGTCGCCCGTAGCGACGGATACTCGCTGCGGGATCGCTGCACCAGACGCACGGCGAACTCGCGCACTTCCGGGCAGAACTTGTTCGTTGCCCTTGCTCGTGGCTCGCATTTTGTCAAGAGTTGGAGCCTCCGCAAAACCCGGGGCGGTTCACAGGTATAAATCGGTAGATTCTTGAGAGGGAAATTTGTTCTTTAAAAATATAGGGTTATGCTAAGT # Right flank : ACGTCGCAGCCGATGGCGGCTACACCGCCCGCACCTCAATCCCCGCCTCTTCCAACGCCTTGCGTATCCCTGCCGCGAACGCTTCGGCGCCGGGCTGATCGCCATGGATGCACAGCGTGTCGGGCCGCAGCGGCACGCGCGTGCCATCCGTGGCGCGCACGGCGCCGTCCTGCACCATGCCCAGCACCTGTTCGATCGACGCGTCCAGGTCGGTGATCATGGCGTCGGGCCGGCTGCGCGAGGTGAGCGAGCCGTCTGGCTGGTAAGTACGATCGGCGAACACCTCCTGCGCGGTGCGCAGGCCCACTGACTCGGCGGCCTCTATCCAGCGGCTGCCGGCCAAGCCGTACAGCACCAGGTCGCTGTCCACGTCATGCACGGCCTGGCACAGCGCGCGGGCCAGTTCCAGGTCCTTGGCGGCCATGTTGTACAGCGCGCCGTGCGCCTTTACGTGATGCAGCCGCGCGCCTTGCGAAGCGGCCACGCCAGCCAGCGCGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4808590-4807460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021111.1 Bordetella genomosp. 13 strain AU7206 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4808589 29 100.0 32 ............................. CCGGAACACCAGGAGAAGTACGACGCCGCCAT 4808528 29 100.0 32 ............................. AGCATGGACATCATTCAGCCGCGCGTCATCGC 4808467 29 96.6 33 ............T................ GTTGGGCCGCCACCACACGGGAAGCGCTGTCTC 4808405 29 96.6 32 ............T................ TCCATCGGTGCCGGCAAGTCCTGGCAGTTCCC 4808344 29 100.0 32 ............................. CCGCGTTGACCTTCTACGCCGAGAACGACATT 4808283 29 100.0 32 ............................. TAGTGTGATTCAGCGCCGCACTACTTTGCTGC 4808222 29 100.0 32 ............................. GTTACGCCGTAAACTTGGTCCTCGGCTGCAAT 4808161 29 100.0 32 ............................. GCCCGCGCCCTGGACGTGCTCGGATACCTGCC 4808100 29 100.0 32 ............................. CTGACAGCCCCGTTCGGGTTCTACGACCTGAA 4808039 29 100.0 32 ............................. TTGATCGAGGGATCGGTCAGTACCGCGGCGAA 4807978 29 100.0 32 ............................. CGCTATTACGATGCACAAGAGGCAATGCAGAT 4807917 29 100.0 32 ............................. CGCTACTTCATCCGCGAGGTGATGGCCCTGAC 4807856 29 96.6 32 .........A................... TAGTCGGCCGGAATCTGCCGCTCGTCCTCGAT 4807795 29 100.0 32 ............................. TTTTGGATATAAGTGGCGTAGCTGCTGATGAA 4807734 29 100.0 32 ............................. GCCAGCATGCAGTACACGCCTGACCGGCGAAA 4807673 29 96.6 32 ............T................ GTGAAGGAGCGCGCCACCGTCTCGCTGCGCGC 4807612 29 93.1 33 ............T...........G.... ACGGTCGCGGCGCCGGCGACGGAGGGGGGTGAT 4807550 29 96.6 33 ............T................ CGGGGGGGAGAACCGCACGAGCCTGGGCTACCC 4807488 28 82.8 0 ........-...T..........T.G..C | G [4807467] ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.8 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : CGCGCACCGGCCGCAACCAGATAGAGGGCGCGGTCATCATGGGCGTAGGCATGGCGCTGTTCGAACACACGCAATACGACCCGCGCAGCGGCGCGCCCGTGAACAGCAATCTGGCGGATTACATCGTGGCGACGCACGCCGATGCGCCGGAACTGGATGTGATGTTCCTCGATTATCCCGACACGGTGTGGAACGAGGTGGGCGCGCGCGGGATCGGCGAGATTGGTCTGGCGGGGATCGCGGCCGCGATCACCAATGCGGTGTATCACGCGACGGGCGTTCGGGTGCGCGATCTGCCGGTGAGGATCGAGGATTTGTTGGAGGCTCGGCTGGCCGCGTAGGACAGGCTAGAAGGAGAGATTTGCGGGGCTCGCTAAGTCCGGCTGCAGTGAGATTCTGTTGATCGGTGTTTGATAACGTGGCAGCCTTCGAAGTGTCAGTTCGTCGGTAGATTTTGGCGGCGTGGATTTGTCGTTTCGAAACAAGGGCTTATCGGAAGA # Right flank : TCCTTGCAGCGCTTCATCCATTCACGTGTGTCTCGGGCGCATGCAGACGAGGCGGAGTTCTCCGAACCGTGCGGTTGTGGTCACGGCGCACACATGGAAGCGGGTGCGGGACATGCTCGGCAGCACTGAACAGACCTCTTGTGCGAAGTCTTGAATGCGGGGTGCCCACATTTCCTCGTCAGAATGCTCCCTGCTTCCGGGATGGGCTTCAGCAATCCGCCAAGGTGATGTCTAGCGTCGCTCGCGGCAACATGCGCGGCTGCAGCCTTTCCCACAAGCATTTGAAGCCCACGTCGCGGATATATCGAGCGCTCACGATCAGGGGCTGCCGCTACGCCTCTGGTTACTAGTTCCCATAAAAGTGCCGGCAGTCGTGCAATAACCGGGACATAATGGTTGTGCAATGTTTAGTTTCTGTTGTACATATTTATTCATATAAATCTAAGAGATTGGCCGTGCCCGAATCCGTCGACAGCGCCCCGACTACATTCAGCCAGCTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //