Array 1 170017-170507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001632.1 Arthrospira platensis C1 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 170017 35 100.0 37 ................................... TAGAAGGCTCGCTGGGTATATGGCAACACCTGCCGAA 170089 35 100.0 38 ................................... CATTTGCACTCATTAGGTATTTCGACTTGGCTTAATTC 170162 35 100.0 38 ................................... CATATAGAAATTTTTGGGCGAGCATAGTCGCCACTTTC 170235 35 100.0 40 ................................... CAGGGAGTAGAACGGAACTTCTACCGTCGCCGTAAAATCT 170310 35 97.1 44 ..................................C AGAAACAGTAAGAAAACATTACCCGTGGTCTCGGTGCCACCACC 170389 35 97.1 49 ..................................C ACTAACCTTCTGCCGTCTCCTGGTTGGGGGTAATTTGGGGGGTTACTTT 170473 35 94.3 0 .................................CC | ========== ====== ====== ====== =================================== ================================================= ================== 7 35 98.4 41 CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAT # Left flank : TTTCTTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAGATGTGCGCTCAGAAGATTTAAAAAATCCCAAGAATCAGAAGATTAAAAATACGGTTCGTGTTTCCTGTTTACCCACAGAGATTATAGCACAAATGAGTCAAATTTATTGCTGTTTTGTTGAGTTGGTTTCACTTTCTGGCTTTCCAAATGTACAAGATTATCTAGAGGTGAATCAGGAAACGCGCGATCCGATTGAACCCTATTATCTTTACTCGGAAATTAAGGAATGGGTTGGGCAAATTTTGGATCACGATCAATAATCTTGTGGGGGTTGAAGAATCGCTGAAACCCTGATTCTTTCGTTGACCCCCCCGGAAAGCTTTCTCTGTCGGAGTTTGAGCGATTATTTATACCCTATTATTGCAAATATGTCTCAATAATTTGGGTGCTTGCTTGACCCCCACAAATTTGAGTGCTAGAGTACAGTCAGGGCAAGGGTTTAAACTCGGTAGC # Right flank : CCCCACCAACCTCCCCCTAAAAGGAGGAAGCCTAATTTTTTTGCTAATTTGAAAGTTCAACCTATAGAGCAAATAACTTTAAAAAAATACCCCCAAATTTGAGGGTATATTGTTAGAACTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTGGTAAACCACTTGATATTCAGCTTGAGGAACAAGCTTTTGTAAAATGCGCTGATGATTAACTGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTCTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCCAAGAATTTGCACAAAACAGGGCAGGCTACCCTTGACAAAGTTAACTGTTTGTGCAGTTGAACCGCTCCTTGAATTCGGTCGGTAGCTCGTCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAT # Alternate repeat : CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 175131-176123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001632.1 Arthrospira platensis C1 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 175131 35 100.0 36 ................................... AGTTAGTCTCGTCGTGTGTCTCCTGGTTGAGGATAA 175202 35 100.0 37 ................................... CAACATTGAGGTATATTAGTACTTCAATACCTGTAAG 175274 35 100.0 36 ................................... CTGAAGAATCTAGTTTAAAAGATTCAACCCTTGCCT 175345 35 100.0 34 ................................... GTTGTATTTAAACCCATGCCTGTCGAGTTCCTTT 175414 35 100.0 40 ................................... ACATGAATCCCCGTCCCGATGGGAAGAAGATTCCTCAGCA 175489 35 100.0 43 ................................... AAATACCTTGGAACACCACCTCGACCTGGTGGGAGGTGAAAAA 175567 35 100.0 41 ................................... TCCTTTCCCAAGTTATATTGGGTAAGATTTCATAGGGAAGG 175643 35 100.0 35 ................................... TGTTCGGGGTATTCTACCCCACAGGAATCACACTT 175713 35 100.0 36 ................................... AAAAGTCAGAACCCAGCCATTAATCAAAGAGGAGAG 175784 35 100.0 39 ................................... TTTACATGTGGGACAAGTTTGATATTGCTGATATCCATC 175858 35 100.0 40 ................................... CTCGCCACTTCGTTCTCTTTTAGCTTGTGAGTGATCTCTA 175933 35 100.0 39 ................................... CAGCCGTTAACTGGAGTGTGGTACTTGCACACCAAGAAA 176007 35 100.0 47 ................................... TTAAATTAGCTGCCCCCCTAGCCCCCCAACTTTGGGGGAGAAATATA 176089 35 85.7 0 T...C................C...C.......C. | ========== ====== ====== ====== =================================== =============================================== ================== 14 35 99.0 39 CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Left flank : TGAGGAGTTTCGCGCCCCGGTGGTGGATTCGCTCGTTATCTATCTGGTAAATTCGGGAATTTTTACCCCGGAAGATTTTACCCCAAGTGACGAACGAGGTGGGGTTTATCTTTATTCCGATGCTCTCAAAAAATATCTGAAGCATTGGCAGGATAAGCTTTCTTTGAAAACGACTCATCCTCATACGGGTTACAAGGTTAGCTACTATCGGTGTTTGGAGTTGCAGGTTTGGGAGTATATTTCTTGCTTGATGGGAGAGCGGGAAGTTTATCGGCCTATGAAACTGGAAAAGTGGTAAACTAGAGTTTCCGGAGGGGTTCGACAACTGCTCAAACCTGCATTGTTTCGTTAACCCCCCCGGAAAGCCTTCTCTCTCTGAGTTTGAGGGATTCTGGAGAGTATTTTATTGCAAATATGTCTCAATTATTTTGGTGCTTGCTTGACCCCCCCGGAAATGGAATGTTACACTCCAGTAATAGCAAGGGTTTCAACTCAGCAGT # Right flank : CCCCACCAACCTCCCCCTAAAAGGATGAGGCCTAATTTTTTTGCTGATTTGAAAATTCAACCTATAGAGCAAATAACTAAAAAAAATACCCCCCAAGTAGAGGGTATATTATTAAAATAAATTCAGTTTCTTTCCATACTTGATACCGGCTTAGAAGTCAAAGTGCTGCTATTTTAAAATGGGTTGTAAACCACTTAATATTCAGCTTGAGGAACCAGCTTTTGTAAAAAGTCATGTTTTTCAATTTGAGCTTTTACCGATTGAAAAGTTAATAATGTTCTTCCTTTCTCGCCTTTTTATGACTAACAATATAGACTCCCCAGGGCAGACGAACTCCTGTTAGAGTCGTGAACTTGAACTGAGCGTGTTCCGGGTTAGCAATATCCAAATCTGCCCAACTCAAATTGGTATTTTGTAAGTTCGTCTGTGCTAAATTTGTACCACTGAGATTCGCCCAACTCAAATCCGCATCCCTGAGATTAGCATAACTTAAATTCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 2989909-2988089 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001632.1 Arthrospira platensis C1 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================= ================== 2989908 35 100.0 49 ................................... TGTTTTGGCAACAGGTTTTTTTTGAACCACTGCCAACTACACCCCAGTC 2989824 35 100.0 48 ................................... CTCCTTAGGCATCTCTTGGGTCTCCAGGTCGATGGAGTCCATAGAGTC 2989741 35 100.0 49 ................................... TCGGCAAATTATTGTACTTTTGCCTTATTTCTTCTAGCGTCTTGATGTC 2989657 35 100.0 49 ................................... ACGATGATGCCTTCGTTTGACGTTAGTGTCAGACGTGCTGAAGTTAGTC 2989573 35 100.0 49 ................................... TCTCTCTCCCAGAAGTTGGCTAGGGAGTTTAGGGTCCCGTTAAGCCGTC 2989489 35 100.0 49 ................................... ATATTCAAAATTCCTCCCGTCTATGATACGCCCGATATCGTTACCTGTC 2989405 35 100.0 49 ................................... CTCAAAGACAATAACTCCTGGTAGAGAGTACCGCTGTCCTTTATAGGTC 2989321 35 100.0 42 ................................... GACGGTTCTTGGCATCATGTTCCATAATTGCTTTTTAAAGTC 2989244 35 100.0 55 ................................... ACGGAAACTTTGTTGTTAAACGCATCACATACTTCTACTATATGTGGTCCAAGTC 2989154 35 100.0 45 ................................... TTTCGGTATGAGGCTCGATTGTATCAACTTTGGACATAAAATGTC 2989074 35 100.0 48 ................................... TTTTTCTCAGAGTGAGAGTATCAGAGCAGAGTCAGGAGTACTTCTGTC 2988991 35 100.0 47 ................................... CCTTTTGGCGTTGGTTTGACTTGGACTACTGCTTTTGATGGGGTGTC 2988909 34 97.1 46 ..............-.................... TAAGAATTGAAGAAGAGTTAGGTTCATATAGTCTTTTAAAACTGTC 2988829 34 97.1 50 ..............-.................... AGCAGGGGCCATTAATTTATCAATCCAATCCCCCTTATTAATCGGAGGTC 2988745 34 97.1 36 ..............-.................... TAATTGTTTAGCTTGCAATAAAGCCTCTAAGATGTC Deletion [2988676] 2988675 35 100.0 46 ................................... AGAAAAGGCAATTGCAGGACTTTCAGTTACAGCATTATCAGAAGTC 2988594 35 100.0 44 ................................... CTTTGCGATATTTTCCCGCAGCTTTTCTCCGTTCCTTCCGAGTC 2988515 34 97.1 43 ..............-.................... AGAAATGTGAACATCATGAGGAAATCACGGGTTTCTTCGTGTC 2988438 34 94.3 45 .........A....-.................... TTTAAAGATATTACTTCATCTCCGGTTCCAATTGATATTATTGTC 2988359 35 100.0 43 ................................... AAGGCTATTCCAAGTTCGACCTTTCCTTGATTGATGATGTGTC 2988281 34 94.3 46 .........A........-................ GACCAGAGAGTGGCGTTTGCTTTGACTTCGTAATATTTACAGCGTC 2988201 34 91.4 45 .................G-.........G...... CGACTAATAGCCCCGATATTAGTGATGAATGACTGCAGCCGTGTG 2988122 34 85.7 0 .........A........A-.G......G...... | ========== ====== ====== ====== =================================== ======================================================= ================== 23 35 98.0 47 CAACCCTACCAATTCCCCCGTCAGGGGACGGAAAC # Left flank : TGATTAATCCACCATTGTACAGGTGCATTGGATTCAGTTAAACGCGCTACGGACAATCGGGATATTTAATTACCCCTCGGACTTGACTCTGGCTGCTACGGTTTTGCTTAATTGTGGCATCGCCCCTGTCCCCCGGATATGGTTGGCGAGGTGATTCTCATAATTATTTCCGTTTTTTGGGGCGATCGTGCCTACTTAATCGATGGATTCGTTGCAGGGTAATGGTTTCGGCTTGTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGACTTCTAATCCTGCCCTAGTTAAAGCAAACTTTAGCCACGCGAAGAAAAGTTTTTGTTTCGGGGGGTTGACAGTCTGGCACTATGGCTGATAATATAAATCCAGCGAAAACAAACGAATTTGCTCCCCGAAAAAAGGGCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCGATCGCACCTTGAAAACCGCATACCGTAAGGTTTCCAAAGGTATAGGGTC # Right flank : GCCCGGTGGTGTGTGGATGTTGTGAGGGTTGAGGTCGTGTCATGGCGGGGTAATTTCGCAGTTGGGGAGGGGGGAAAAAGACGAGTCTGGGGGATAAAACTTGTTGGGGGTGTAGAAGGGTTAGGGTTGGGTTGAGGCGTGCAAAATCCGATTAATAATGCCACTGGTAGAAGTAGGCATTTCCACGGCAATGAGGACGATTTTACCGTTATAGGCTTGAACCGTGGGGGCCTCCGGTAGGGTGTCAATGGTGTAATCACCACCCTTAACATATATATCAGGTTGTAGCTGTTCAATAATCGCCGTAGCAGTGCTTTCTGGAAAAATGACCACTGCATCTACCGGTTTTAACTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCGGCCGAGTGGGGTTTAATCAGGCGAACAGAGCGATCGCTATTGAGACCCACTACCAGCGCGCGCCCCAAACTTTTGGCTTGGGTCAGGTAGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAACCCTACCAATTCCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 3064508-3066386 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001632.1 Arthrospira platensis C1 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 3064508 37 100.0 46 ..................................... CATCACGGCAGATAAAAAGCACTACACGAATGTTTTGACAAATAAA 3064591 37 100.0 41 ..................................... GTTAGTACTCCGGTAAACCTCCAGGACTCCTTTTATTCCAG 3064669 37 100.0 41 ..................................... CAATCCAGGACGTACCTGGAAGTACCTGATGAGGAAGCGGT 3064747 37 100.0 39 ..................................... GTCTAAATCGTCCCCGTGCTGAATAACTAAGTATTTTCC 3064823 37 100.0 41 ..................................... CTTCAACTGTGGGGTCTCCCAGGCCCGCCCCTGTAATGTAT 3064901 37 100.0 36 ..................................... GTGATGATTCTCTCTTTAGGAGAAACCTTTACCAGA 3064974 37 100.0 44 ..................................... ACCACGTGGTAGGTTTCCTCATCTAATTTTTTCAGTTTCGGAGA 3065055 37 100.0 43 ..................................... CAAGTTTCTCAATCATCACCTCCGGGAGGTTAACCAGTATGGA 3065135 37 100.0 48 ..................................... ACTTCCATCACCATCTGTCGACCAAGGCGGTCGACAAAGGCGATTTCA 3065220 37 100.0 49 ..................................... CAAACGACCCCTTGATGTAGAGGTTAAGCTCGAAAAGCGCCCCGTTAAT 3065306 37 100.0 43 ..................................... GGAACAGATTGTGAGAAGCGTTAGAGGATGAACGACCTGATAG 3065386 37 100.0 44 ..................................... TTCTCAATATAATATCCTTTATGCGTTCTTCCAATTCGACCTTT 3065467 37 100.0 41 ..................................... AGATACCTGACTTGCATGGGTATTCCGTCTAAGCTGCCTCA 3065545 37 100.0 41 ..................................... TCCGGGAATTTGGACCCAGTTAACGTCCCAGTTAACGTCAG 3065623 37 100.0 46 ..................................... TAAGTGGGACTATAGTTGTCCCACTGCTGCCGTATGTTGATAAACA 3065706 37 100.0 41 ..................................... AAACATCTCTTATCTGTTCTAAGAAAGTCAATCCATAGTTT 3065784 37 100.0 43 ..................................... GAGAACTTCGAGGTGGTCGAAGCTTCATTAAAACCATATCGAG 3065864 37 100.0 46 ..................................... AAGACTCGGTGGGGGGGAGCGATCGCTTATTTGAGGAAATAGGCGA 3065947 37 100.0 44 ..................................... CACCTCCATAAAAGTCCAAGATTTTGTTAGGAGACCACATAAGA 3066028 37 100.0 39 ..................................... GTTCAAAAAGCAATCTACGGACACCCGTTTGTATGCCCA 3066104 37 100.0 49 ..................................... TTCAAACTATTAGGGGTTATCGTGCTAGGTGTAAATTGTGATAATTCCC 3066190 37 100.0 44 ..................................... ATCGAAGGGGGCATCGGCAAAGGTCCAACTCTGAACTCGTACCG 3066271 37 100.0 42 ..................................... CCGACTTCTACTGCCTCAATCGAGAGGTCGGCAATACCATAG 3066350 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 24 37 100.0 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : TCGTTGATTTGGTGGCTAATCTTGGTGACAGGTTTCCCCACAGCCAACTACACCTCACGCCACCCCTAGACCATAGCCCACACCTGGGCGATTTGATTTGTACTTGGGCGGAATCTTGCCTCTAGGATACCACCTGCCTGCTGCAGTGGGTGGTGATTCTCATAATTCTTTCGGTTTTGAGAGGCGATCGACACTCCCTAATGGCTCTGTTGCCTTGGGGGTAATAGTTGCGGGGTTTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGAGTTTGAATAGGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCGCTGTCTCTGATAGTATTAATTTACGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTAGTCTCGCGCGATCGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGTATAGG # Right flank : CCGTTTCCGCTATTTTTGAGCCAACCAAACCATTGAGCCAACCGGACGATCGCATTTCCCAGACGAGGAAAGCGAAACCGCAGAAATTAGTTAATTTGGAGAGCGATCGCCAGGTATAATTTTCTGTGAGGGAATTAACTCAATCCATGGCACCAAGTTCATTGACACCAGAAACACACCTACCAACTTTCCCCGTTTTGGGATTACCAGTACATCTGGCTGATAATTATAGCCAGTGGCTGTCATCGCGGCTGAGTCAGGGTTTGGGAACTAATGTCATCACCCTCAATGCTGAAATGGCGATCGCCGCCGAATCTAATCAACCCCTAGCCGAATTAATCCGAAACGCCGACCTAGTAATTCCTGACGGTGCGGGGGTGGTGCTTTATTTAAAATTCAAAGGACACCCTATCCAGCGTTGTCCGGGAATTGAATTAGCCGAAACCCTCCTCCATGAGTTTAACCAGCTAATACCCTCTGGATTGGTGTTTTTTTATGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 5 4326393-4327217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001632.1 Arthrospira platensis C1 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 4326393 37 100.0 41 ..................................... ATTCCCATGATCGCGTTTATTTGGAGCAGTAAACGCTGCTC 4326471 37 100.0 43 ..................................... CCCACGTTTGATGATGATACATGGGATTAGTTCCCATTCACGA 4326551 37 100.0 44 ..................................... TAAGAGAATTCTCATAGGATATTGCCCCTATATTTTCGTAGTAA 4326632 37 100.0 38 ..................................... TCAGCTATTTATCTACTTATCTACATTTTTAGTATCCC 4326707 37 100.0 42 ..................................... GTCCCACTCTTTAAGAGTGGGGCCAGTCGAAATAATCATCGA 4326786 37 100.0 45 ..................................... GCCACACTACCGTTCTCACGATCTGTTCATAGCAATATGCGTCGT 4326868 37 100.0 43 ..................................... CGGGTATTCTGACTTTTTCGGAATATCGGGAGTATCTAACAAA 4326948 37 100.0 42 ..................................... AAGATTTTCTTCCTATAGTCGCTGAAACCATCCTCTTCAAAT 4327027 37 100.0 39 ..................................... AAAGATCAAATAATAACGCCAATCTAAAATTAAGTAACA 4327103 37 100.0 41 ..................................... TCCTCCTGTTAAGGAGCAGAACCCTCCGTTGTGTTTTTCAA 4327181 37 81.1 0 ..........................C...AATTG.T | ========== ====== ====== ====== ===================================== ============================================= ================== 11 37 98.3 42 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTAAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCCACCAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCCTACGAACCACCAGACTTTCTCATTTTGTAAGGGTTGCGATCGTCTCATTTTTCATCACTTTGGGGCTGAAATGCCTTTGAGCCAATGATTTTCAGCAATGTAAAGTTATATTGCATTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAGGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : TTTAGTGGTGATACTTCCCGGCGTTCAGTTAACCGATAGGGCGATCGCTTAACAATTCATAGTAGGATAGCATCAGTCATATCTCCCAATACAATCAAAGATAGGTCAAGTCACTTCACAGCGTAGAGGTGATTATCCAAACTCCCAAAATAGACCACCCCTCCTGACACCGCAGGGGAAGATAAAATCTCACCTTCTGTTTTAAACTTCCAGCGTTCCTGTCCAGTGTTAGCATCTACGGCGTAGAGGTGATTATCCCTACTCCCAAAATAGACCACCCCTCCTGACACCGCAGGGGAAGAGTCAATCCAACCTTCTGTTTTAAACTTCCAGCGTTGCTGTCCAGTGTTAGCATCTACGGCGTAGAGGTAATTATCCTCACTCCCAAAATAGACCACCCCTCCTGACACCGCTGGGGAAGAGCCAATCTCACCTTCTGTTTTAAACCGCCAGCGTTGCTGTCCAGTGTTAGCATCTACGGCGTAGAGGTGATTATCCCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //