Array 1 222315-223668 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAYF01000044.1 Streptococcus agalactiae strain NNA013 contig59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 222315 36 100.0 30 .................................... ATTAAGTTGCTTAGTGCTTTCATAATCATC 222381 36 100.0 30 .................................... AAAAAACTCAAACGTGATTATGACGGCGCT 222447 36 100.0 30 .................................... CTAACGAAATTCTTGTTGTACCCAATATTT 222513 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 222579 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 222645 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 222711 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 222777 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 222843 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 222909 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 222975 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 223041 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 223107 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 223173 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 223239 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 223305 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 223370 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 223436 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 223501 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 223567 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 223633 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //