Array 1 560361-559075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZA010000001.1 Listeria booriae strain FSL L7-0149 NODE_1_length_780610_cov_15.496944, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 560360 30 100.0 36 .............................. GATAATAAAAAGCTAACCTTTGTACCTGTAGAAGAC 560294 30 100.0 37 .............................. AAATCTTTTTTCATTTGTACCTTCAAAATGAAAATGA 560227 30 100.0 34 .............................. CAGTCGCGTATGACGGCACTTCACCTTGTTCGGC 560163 30 100.0 36 .............................. GTGAAGGCGCTCGTCCATGTATGGCATCACATGGTC 560097 30 100.0 35 .............................. CCATCCGCTTCAAAAATAGCACCACACGGACCTTC 560032 30 100.0 36 .............................. TTGTACATTGACAATGAATTGCATGAAAAGTTAGAT 559966 30 100.0 35 .............................. TCAATTACTTTATTACAAAATATTAGCTCTAAGCC 559901 30 100.0 36 .............................. CTGAAAGCTCTTGATATATTGCAATTAATAGTTGCC 559835 30 100.0 36 .............................. TCGACAGCATCGTTCTTCGTATTTCCTGATTGTTGT 559769 30 100.0 35 .............................. TTCTTCACTCTCCATTACCTCACCGCCTTACGTGT 559704 30 100.0 36 .............................. TATTTATAGGGAGATCAGGCGTATTTAAATCCTCTT 559638 30 100.0 36 .............................. TTAAGAGCGAATACTTCTCCGACATTTTCCCGCAAG 559572 30 100.0 37 .............................. ATTGAAGTTTATCAATTGTAGGTTTTTGAGAACTCCA 559505 30 100.0 39 .............................. ATCATTTCGCAACCCTGTTTGGTGCAATCGAAGCTTGGT 559436 30 100.0 38 .............................. GTTTTAGAAGTGTTGAATAAAATTATGCAAGGTATTAA 559368 30 100.0 37 .............................. ATCCATTCCAAGATCGCCAATCTTCGCTTTCGTGTTG 559301 30 100.0 36 .............................. TACATCATAAAGGCGACAACTAAGAATAACAACACT 559235 30 100.0 35 .............................. TCAATCATTTACAACACCCTCACTATCTTTTTCTT 559170 30 93.3 36 A................A............ TGGCATCAATTTCCGCTTGAATCACGTCGTACAATT 559104 30 96.7 0 .............C................ | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGTAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACGGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCGTTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATGAGGGGGCAACGACAGATTTTTGTTAAGCGTTGGTGTGACTAGATTTGAGACCGTTTTTGGAGGTTGGATTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTCAATCGGGTACCT # Right flank : ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTACAGAATAAATTATCATTCAACAATCCTAACTAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATCTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGCGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 50419-49784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZA010000010.1 Listeria booriae strain FSL L7-0149 NODE_10_length_119533_cov_14.650750, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 50418 30 100.0 36 .............................. TAGACCCAATTCGCGCGGGTATCAAAACAGGGATAA 50352 30 100.0 36 .............................. AGTGTTATCACGTCATTTTCGGTGTCGCCTCGCGTT 50286 30 100.0 36 .............................. TCTTTTCGCAATGCTTCCATATCGGTATTTTGTAAT 50220 30 100.0 46 .............................. TTAGGAATCCGCCGACATATCCGCCGACATATCCGCCGACATCCTT 50144 30 93.3 37 AG............................ CCGTCTTTGTCCATTTGCTTCATGGCTCCGACACTGC 50077 30 100.0 35 .............................. AATTCTGAACCCTTAGCGAAAGTCTCTGATTTTTT 50012 30 100.0 35 .............................. CAACTGCGAGCGTACAAAAGTAGTTATCAGTTACA 49947 30 100.0 37 .............................. AAGGCAATAATATTCTGCAAACCATCCGGCAGATTGC 49880 30 100.0 37 .............................. TTTGAAATAAGACGCAGTATTTCTGATTTAACGCATT 49813 30 80.0 0 .................A..A...A.G.TC | ========== ====== ====== ====== ============================== ============================================== ================== 10 30 97.3 37 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTTGCCGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCATACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGAAGAAGGGATTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGCTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCGAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTTGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACCA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //