Array 1 126649-127076 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFB01000012.1 Lewinella agarilytica strain DSM 24740, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 126649 37 100.0 29 ..................................... ATTCTGGTCGCGGTAAAACCGCTCATACT 126715 37 100.0 26 ..................................... CCCTTGAACGGTTAGGATTTTTTGTT 126778 37 100.0 27 ..................................... TTTCCCGACCAAAAGTACCAAAGACAG 126842 37 100.0 28 ..................................... AGTTGAGGATAATGACCAGCACCGCGAG 126907 37 100.0 30 ..................................... TCATAAGAATTGTATTTATAGTTCAATCTC 126974 37 100.0 28 ..................................... TCTTTTCCGAATTTACGACCTAGAGAGT 127039 37 97.3 0 ....................................A | A [127073] ========== ====== ====== ====== ===================================== ============================== ================== 7 37 99.6 28 CCCGGAGTCACTGTGTGCCGCAATAGGGCATTCCGAC # Left flank : CCGCCTGGAACTCCTCGGCTCCTGCCTCACCGGCCACCTCCGGGCACTCGCCGAAACTGCGGACCCCAACCTCGATCGCAAGCAAATCGAAGCCCGCATCCTTAGCGTAGACAAGGTGAAAATGACCCGTTGGCACGGGAATCAGTTCGTAACGTTCAACTTGGTGGCCTGTGCTAACTTCATCCCGCCCTTCGGCCTCGGTGTTGGACGATGCCACAGCTTCGGCTTCGGAGAGGTTTGTGGCAAGGAGCGGTACGCTCGGCTTTCTGCCTCCAGGCGTCAGTCTAAAAAAGAGGTGGCCAGTACCATTACAAAGTGACGTGGCGGCGTACTTTATGCATCGCTACAACGTGATAATCGCCATTAATCACCTCTTCTAAAATTGACATAAAAACCGTATTTTCAAGCTTACGTAAGCGATTTAAATCATATTATGAATTCTGCCATACATTTTTTATTTCGCAATTGTATTGATAATCAGGTAGTTACAAAAAATAGCT # Right flank : ATACTAGTCATCCCAATCCCACCGCTTTTGAGTCCGGCGGAAAAGGAAGTGACACCTCCCTTCGGTCGGCTTACATTTCCCTTTCCGTCGGCCGCGGCGGGCTTGTGCTGACGGGCCGTTTTGGTGAGGTTAGTTAGGGGTTATAATTCTATCATTCTACAAAATTCCATTACCCTGATTTCTTTGTTATTAGGCTGGCGAATAATCTTTTGGATGTCGTTAATAGTCCAGGGCCCCAAGGCGCAAATGTTGAATTTTAAATGTTGAATTGAACATTGAAAATTGCTCTCGGAGTCACTGTGTGCCGCAATAGGGCATTCCGACGCTAAAAGCTCGAAAATTGCCCTTGGTTAAACCCGGAGTCACTGTGTGCCGCAATAGGGCATTCCGACTCAAATAGAGTTCCATCTAGGTTACTTACCCGGAGTCACTGTGTGCCGCAATAGGGCATTCCGACTACTCTGACACCTTGTCAGTCTGTTTCTACTCCCGGAGTCACT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGGAGTCACTGTGTGCCGCAATAGGGCATTCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 127363-127804 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFB01000012.1 Lewinella agarilytica strain DSM 24740, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 127363 37 97.3 31 .T................................... GCTAAAAGCTCGAAAATTGCCCTTGGTTAAA 127431 37 100.0 28 ..................................... TCAAATAGAGTTCCATCTAGGTTACTTA 127496 37 100.0 31 ..................................... TACTCTGACACCTTGTCAGTCTGTTTCTACT 127564 37 100.0 33 ..................................... CTTGCTGAAACTTAAAGTTCAAGCTAGAGAAAA 127634 37 97.3 29 .....................G............... ACATGGAAAGTTTTGAAGAACCCAGCGAT 127700 37 97.3 29 .....................G............... TTACCATTTTTGCCAGGAGTCTGGTCTTG 127766 37 89.2 0 .T...................G.........A....A | A,A [127797,127801] ========== ====== ====== ====== ===================================== ================================= ================== 7 37 97.3 30 CCCGGAGTCACTGTGTGCCGCAATAGGGCATTCCGAC # Left flank : AATAGGGCATTCCGACAGTTGAGGATAATGACCAGCACCGCGAGCCCGGAGTCACTGTGTGCCGCAATAGGGCATTCCGACTCATAAGAATTGTATTTATAGTTCAATCTCCCCGGAGTCACTGTGTGCCGCAATAGGGCATTCCGACTCTTTTCCGAATTTACGACCTAGAGAGTCCCGGAGTCACTGTGTGCCGCAATAGGGCATTCCAGAATACTAGTCATCCCAATCCCACCGCTTTTGAGTCCGGCGGAAAAGGAAGTGACACCTCCCTTCGGTCGGCTTACATTTCCCTTTCCGTCGGCCGCGGCGGGCTTGTGCTGACGGGCCGTTTTGGTGAGGTTAGTTAGGGGTTATAATTCTATCATTCTACAAAATTCCATTACCCTGATTTCTTTGTTATTAGGCTGGCGAATAATCTTTTGGATGTCGTTAATAGTCCAGGGCCCCAAGGCGCAAATGTTGAATTTTAAATGTTGAATTGAACATTGAAAATTGCT # Right flank : ATACTAGTCATCCCAATCCCACCGCTTTTGAGTCCGGCGGAAAGGGAAGCGACACCTCCCTGCGGTCGGCTTACATTTCCCTTTCCGTCGGCCGCGGCGGGCTTGTGCTGACGGGCCGTTTTGGTGAGGTTAGTTAGGGGTGATAATTCTATCATTCTGCGAAATTCCATTACCCTGATTTCTTTGTTATTAGGCTGGCGAATAATCTTTTGGATGTCGTTAATAGCCCAGGGCCCCAGGCGTAAATGTTGAATTTTAAATGTTGAATTGAACATTGAAAATTGCTCTCGGAGTCACTGTGTGCCGCAATAGGGTATCCGCCAGGATGGTCGCAAGTTGCCCCGCGAGGCGAAGCGGTCCTCGAAGCGTCCTGGAAGGACCTTCGAGCGTCCGTGTTCCTTCATTGCACCTGCGCACCGGCGCCCCCATCCCATCGGCCTCCGCCCCCTGTCCATTATCTTACATACAAAAAGGAACACATGGCTAAGAAGGTAAGCATC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGGAGTCACTGTGTGCCGCAATAGGGCATTCCGAC # Alternate repeat : CCCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 130815-131732 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFB01000012.1 Lewinella agarilytica strain DSM 24740, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 130815 37 100.0 34 ..................................... AAACCGTATTTGAATTTATGTTGATTTTCATATT 130886 37 100.0 31 ..................................... ATGCGTATATCGCAAATAGTGAAACAATAAA 130954 37 100.0 32 ..................................... TTTAATAACATAACAAATCTGTCATCATCTAC 131023 37 100.0 32 ..................................... CTTTTAAGTGTCTCTTCGCAATCCCATACGCA 131092 37 100.0 30 ..................................... AGAAAGATTCCTAACTAAGATCTCTCTAAA 131159 37 100.0 33 ..................................... TCTAATTTCAGTTTGGATAGATTGTCTTCTGCC 131229 37 100.0 30 ..................................... AAGCTCCTCAATTTCGCCTTTCTTTAGGAA 131296 37 100.0 30 ..................................... ATATTGGCGTCTCTCCGAAGTATCTTTTAA 131363 37 100.0 29 ..................................... AAGAAATTTGTATTTTTGTTCCCAATTAT 131429 37 100.0 27 ..................................... GCAATTGGTTTATATCTGTTATCCATT 131493 37 100.0 31 ..................................... AAGTTGATTACGATCATTTGGTACCAACAAA 131561 37 100.0 31 ..................................... AACTAGGACCTTCATTACATTGTTCTGGAGA 131629 37 100.0 28 ..................................... ATAAATCTAAAGACAAATAGGATTAAGA 131694 37 94.6 0 ...............................A....A | A,A [131725,131729] ========== ====== ====== ====== ===================================== ================================== ================== 14 37 99.6 31 CCCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGAC # Left flank : GAAGGACAAATTTACCGCCATGCCCAGGATCTAGCCCGCACCATCGACTCTTCTACCCAACGCCCCAATTGATGAGTATGCAAACCTACCTTATCTCCTACGACATCTCCGAAAATAACCCCCGGCTCAAAGCTAGCAGATTACTGCTGCGCGCTGGCTGCTTCCGCGTTCAAAAATCCGTCTTCATCGGCACCCTTTCCGATACCCGTTACCTTCGCCTGCGTAAAAGTCTCGATGCACTCCGGCAGCGGCCCCGCTGGTCGACCACCGATCAAATCCTCCTCTTGCCTCTGCACCAGTACACCCGTGATAATCTCGACACCATCGGCTCCTCCCGCAACGATTGGCCCCTCATTTTTCGCGAGCTGCATACCTTGGTTATTTAACCCAAAACACCTATTTTACCATCGATTTGATGCGTTTTAATCATATTATAAATTCTGCCATACATTTTAATGCTTATTATTGGGCTGATAATCAGGTGTTTATGAAAATTAGCT # Right flank : ATACTAGTCATCCCATTCCCGCCGCTTTAGCGTCCGTCAAAAACGCAATCGACACCTCCCTTCGGTCGGCTTACGCTCGCGTTTTTGGCGGACGCGGCGGGCCATGAGCTGACGGTCCGTTTCGGTAGGGTTGGTGGGTTGAATTCTAAAAATCCTACCAAAATCCAATTAATCCTAATCTATTGGTTATTGGGCTTGTGGATGATCTTGTGGATACCGTCGATGATCTTCGGGCTTGCGATGAAATGTTGAATTTTAAATGTTGAATTGAACATTGAAAATTGCTCTCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGACGATACGATGATTGTGGACGCGCAAAGTTGCCCCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGACATTTTGTTGGTGATATATCGTTGTTAATTATCCCCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGACAGAAGGAAATAAATTCGTTGTAACGTCATTGGTTCCCGGAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 132018-132881 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFB01000012.1 Lewinella agarilytica strain DSM 24740, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 132018 37 97.3 30 .T................................... GATACGATGATTGTGGACGCGCAAAGTTGC 132085 37 100.0 32 ..................................... ATTTTGTTGGTGATATATCGTTGTTAATTATC 132154 37 100.0 34 ..................................... AGAAGGAAATAAATTCGTTGTAACGTCATTGGTT 132225 37 100.0 31 ..................................... AGTTTACTTTGTTTTCGAGCTGTCGCGCGTA 132293 37 100.0 31 ..................................... TCTCCGTGGTTTAGTAAATGTCGAGCAAGGC 132361 37 100.0 32 ..................................... TCGGTCTCCGTTACGAGGAGCATGTCGTACCC 132430 37 100.0 31 ..................................... AATTTGTGGTGTTTTACGGTGAATGGTGAAA 132498 37 100.0 34 ..................................... ATTTTATATCGCGATGCTCAATGCAGTGGGTACA 132569 37 100.0 31 ..................................... CTGTTTCTTTATCGCCCAAATTTTCACAGAC 132637 37 100.0 34 ..................................... CAGGGATGTTGACCTCCTCTCCTTTCCACCCACG 132708 37 100.0 32 ..................................... CCGAGTGAGTCGGTCCATACGTACGTGTAGGG 132777 37 100.0 29 ..................................... TTAAACATGCCTGGAATTTTACTTCTAAT 132843 37 94.6 0 ...............................A....A | A,A [132874,132878] ========== ====== ====== ====== ===================================== ================================== ================== 13 37 99.4 32 CCCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGAC # Left flank : GGGCATTCCGACAAGTTGATTACGATCATTTGGTACCAACAAACCCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGACAACTAGGACCTTCATTACATTGTTCTGGAGACCCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGACATAAATCTAAAGACAAATAGGATTAAGACCCGGAGTCACTGTGTGCCGCGATAGGGCATAACCAGAATACTAGTCATCCCATTCCCGCCGCTTTAGCGTCCGTCAAAAACGCAATCGACACCTCCCTTCGGTCGGCTTACGCTCGCGTTTTTGGCGGACGCGGCGGGCCATGAGCTGACGGTCCGTTTCGGTAGGGTTGGTGGGTTGAATTCTAAAAATCCTACCAAAATCCAATTAATCCTAATCTATTGGTTATTGGGCTTGTGGATGATCTTGTGGATACCGTCGATGATCTTCGGGCTTGCGATGAAATGTTGAATTTTAAATGTTGAATTGAACATTGAAAATTGCT # Right flank : ATGCTAGTCATCCCAATCCCACCGCTTTTGAGTCCGGCGGAAAGGGAAGTGACACCTCCCTGCGGTCGGCTTACTATTGCGTTTTCAACGGACGCGGCTGAAATGGGCTGACGGGGTTGCTTCGGCTGAGATGGTTGGTGGGAATTTTAGAATCCTAAAAATCCTACCTAATCCTTTTAATCCTACCGCGAAGCAGCTACGAAGTGAATCTATCGGTTTTGAGGCAAGTGAAATTCTAAGGTTCTAGAGACTGTCTGGACGCCTCGGTTCAATCGCCAATCAAGAATCGAGAACAGCAAATCGCATATCTTTGAGGAGCCATGTGTGCCGACAAAAGGCACTGCGACGGGTCATTCCTACCTACGCAAGGCCCAAGCTCCTGCAACGCCCCCACCGCTCTTTCATCCCCCGCCTTGCACCTGCGCTCCGTCGCCCGGATACGCTTAACAACGTATTTGTCTACGGGCCAGGAAAACCACTTGACACGTATCGAAAATAGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGGAGTCACTGTGTGCCGCGATAGGGCATTCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 299953-304234 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFB01000001.1 Lewinella agarilytica strain DSM 24740, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 299953 37 100.0 37 ..................................... GTTTTCACTGTTTTTTGCAAAAGCTCGTAGCTTTAGA 300027 37 100.0 34 ..................................... TTATCAAAATCTTCATAACCATTGGCGTAGTAAG 300098 37 100.0 37 ..................................... ACTTAGCGCACTCAGCAACTTCATCCATGGTAATCCC 300172 37 100.0 36 ..................................... GTCCTTTTCATAGGACACTGTTGCGTGACTGTTGAA 300245 37 100.0 38 ..................................... TAGCTAATACTATTAATGTAATATTCATTTTATGTCAA 300320 37 100.0 39 ..................................... TCTTTGGAGCGTTTGGCGTACAGGACAATCAATTGCTTG 300396 37 100.0 36 ..................................... CGGAATTGTCACCAATTTTCCGGTGCCGTTGTTCTT 300469 37 100.0 37 ..................................... AAAGTTTGGCGACTTCCGAAGGTGCTTTTTTTGTGAA 300543 37 100.0 35 ..................................... AAACGTGGATAAGGTGTTGAAATGTGTTTTCACCG 300615 37 100.0 36 ..................................... TTACCCATTTCCCGTAAGTGTCGTAAGACCACCAAG 300688 37 100.0 35 ..................................... TAGACGTGCCCATGTAATAGAGTTTATTTTTTCTT 300760 37 100.0 36 ..................................... AAGCCGTTAGGGGCACTATTGTGCTTTGCTAATAGT 300833 37 100.0 36 ..................................... ATCTGATTAAACATTCTTTAACATTTGATAAGTTAA 300906 37 100.0 36 ..................................... GCATACCTATCCTTCGCCGGGTGTTGTGCTCCACTT 300979 37 100.0 34 ..................................... TCTCCTCCTCCGGTCCACACCTCAATATCTCCGA 301050 37 100.0 36 ..................................... AGGTGTTGTTAGGGTGCCACCAATAGTCTTTTCCGT 301123 37 100.0 35 ..................................... CCCTAGTTTTGCGCGAACTTCCTTGGTGTTCGGCA 301195 37 100.0 36 ..................................... CGTTACCTTCAGTATCCGTGAAGGTTGTTGGAGCAG 301268 37 100.0 38 ..................................... TTGTTTGAGTATAGCTAACAAGTTCCCAAATGTAATGG 301343 37 100.0 35 ..................................... CCGCCTGATCAGGGAGGTAATCGAATAGATCGACA 301415 37 100.0 38 ..................................... TAGAGTTAAGGCCCAATATTAGCTCAAATCCTCTCCGC 301490 37 100.0 39 ..................................... TGGTTCGCCCATTGACCTTCCCAGGTTCAATGTTGGCAA 301566 37 100.0 39 ..................................... CCATTGGAAATCCTCATCAATGAGGTTGAAATTAAAAAG 301642 37 100.0 36 ..................................... CGTTTTCGTTTTCAATCTGCTGGCTTCGTCTCATGG 301715 37 100.0 36 ..................................... CCTTTTATTCTCTTTCATTGAGGAAAGATCAACATC 301788 37 100.0 37 ..................................... TAGTTCAACGACGGTCAGCGGTGCATCTGGTTCATGC 301862 37 100.0 35 ..................................... ACCGCATTCTTTGTGGAATTGGTTTATTATCAGTA 301934 37 100.0 34 ..................................... GTTAATGGGAATGTGACATTACTAGCCAACTCTC 302005 37 100.0 37 ..................................... TGGTTCTTTTTTGGTCCGATGGCGTTGCCCTTCGTGG 302079 37 100.0 36 ..................................... ATTTTTGTTCCCAATTATGGAACGTCACCGACGTAC 302152 37 100.0 36 ..................................... TCGTCATATCCATTACACTGAAAAACTTCAACATCC 302225 37 100.0 38 ..................................... TTGCAGAGAATAGCGTTGTTAAACTGGAAGCTGTCAGA 302300 37 100.0 35 ..................................... TATTCTATTTCAAACCCCAAGGACTCAATGTATTC 302372 37 100.0 38 ..................................... TCGTGCGCAACTTAGGTGATTAGAGTGCTTTAAGATAC 302447 37 97.3 36 ...............A..................... TTTAAGACGCTGTTAACGCCTAATGCTTTAACAAGC 302520 37 100.0 36 ..................................... TTCTCATCTTCCGACCAAGAGCGCCAGTCGTACCAG 302593 37 100.0 36 ..................................... GGAAGGCCAGCAGCGCACCACCGGCCACAGGCAACA 302666 37 100.0 36 ..................................... CTTCCAAGGTAAGCTGTGTTAGGCTGCACACATCCC 302739 37 100.0 38 ..................................... CATTTGTACCCATCTTCATAATACCGAATCAGGCAGAT 302814 37 100.0 36 ..................................... CCCGACCAGGTGGACAACGCAGCCCGAACAGCCGCG 302887 37 100.0 37 ..................................... GTTTGCCGTTTCTAAGTACGCTTTATCGGTTGTAAGC 302961 37 100.0 37 ..................................... TTCACCTGAATAAAGCCGTCCAGCTCATCGAGACCAG 303035 37 100.0 35 ..................................... TTGGCGGGCTGACCCGTTAATTTTTTGAAACTCAA 303107 37 100.0 34 ..................................... TCGGGGAGCCGACCGTTCAGCTTGAAGCAGAGCG 303178 37 100.0 35 ..................................... GTGATGCGCAAAAAGATTTGGGTGAATTTGCCCAT 303250 37 100.0 34 ..................................... TTGACACCTTGCGCCCAAGATTCAAGGTACACCA 303321 37 100.0 36 ..................................... GTAGGCGCAGCCCGGGGGTTAATACATCACTAATTT 303394 37 100.0 33 ..................................... CCAATATGCGCTCGTTACCTTTACGCCCTTGTT 303464 37 97.3 36 .................T................... AAAGATGGTAGGACCAGCCGAATTAATGATTCGACC 303537 37 100.0 37 ..................................... AGGATGTGACCCATTTTAAGGGTAGCCTGAGCTACTT 303611 37 100.0 38 ..................................... TATTACCTTCTCCGTCTTCGATGGTTAATGCACCATAC 303686 37 100.0 38 ..................................... CCCAGTTCGCGCCCGGTGTCCTCATTTACGATTAACCA 303761 37 100.0 35 ..................................... ACAACCCCCAAATTTTTTCAATCCCCCGCCAAGCA 303833 37 100.0 36 ..................................... GCCAGCGTTTATACCTAAAGCCTTAGCTACTTTGCG 303906 37 100.0 36 ..................................... TTCTTCTCCTTCCCGATCAAGGGTTTTGAAAAAGTT 303979 37 100.0 36 ..................................... TAATGTTATAGGATGCTGACGATCTAATCCTGAAAG 304052 37 100.0 35 ..................................... AGCAGCGAAATCGTGTAATCTTCAATCCAATCCCA 304124 37 100.0 37 ..................................... GTCGGCGTTCTGCTCTGTTATTACCGCCTCAATACTG 304198 37 97.3 0 .......C............................. | ========== ====== ====== ====== ===================================== ======================================= ================== 59 37 99.9 36 CCTCCGGAGCCTCATCCATCACAAGAAGGATTAAGAC # Left flank : CCGAACTAAACGAACGAATTGCTCAATTACTTGGTATTCTGCAGGATGCCCCCATTAAAGCCACCGAAATGGTTTACCTGATCATGTATGACATTACCGACAACAAAGTCCGGCGTGAAATTGCCAACTATCTCATCACCGCTGGTTGTACGCGCATTCAGAAAAGTGTTTACCTGATCAAAACCAGCAACACCCGCTTTGAAGAGATTCATATCACCCTGCGGGAAGTCAATGATCTGTACGCCAACGAAGACAGCATCATCCTCGTTCCCGTAAATAGTACCGACGTGCGCGGCATGCAGCTGATCGGGCAAAACGTGGACATAAAACTGATTACCGACCCGCCCAACACCCTGTTTTTTTAGTATTTTTGTTGCTACTATATTTTTGTCCAGGCAAGTACACCTTACAGAAAAGTCACTTTCGATGCTTTCCAGCTACCAGCATCCGCAACAAAACACTCTTAAAGAACTATTTGCCAACCGTTTACGAAAAATACA # Right flank : CATCTTTAGATAACGATAAACCATACCTTCACCGTCTCCGGAATATCATCTAATTGAGGTAGGTATCATCCGGGTGCCGGGTGCCGGAAGTTAAAATTTACACGGTGCTTTAGAATGAAACTTCAGAAAATCTTTCTTGATCCTACGCTGTTTTCTCCTCCCTTCTCCTGATCTCTGCGTTCTCCGCGCGCATAATCCCCCCCGCTGCGAAGCAGCCCAAATCCGTGCACCTCTGTGTTAACCTCCGTGAACCTCTGTGGTTAAACTAAATCGCGAAGCGATCCCTCCTCCAAACGCATACCCCCCCGCTGCGAAGCAGCCCAATTCCGCGCACCTCTGTGTTAACCTCCGTGAAACTCTGTGGTTAAAACCAAATCGCGAAGCGATCCCTCACTCCCCCTCCCGCAGAACCCAGTCCTTGCGCCCAAACCACTGCCATTCAACCTTAGTCAAATCAACCGTCTCGTCGATAAACTCTTGTCGTGAACGGCCATTCAGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCGGAGCCTCATCCATCACAAGAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //