Array 1 139775-139002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKC010000002.1 Saccharopolyspora sp. 7B contig_00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 139774 36 100.0 39 .................................... ACCGACCGGTTGCTCTACGACGCGAGCGCGGAAGCACAG 139699 36 100.0 39 .................................... CAGGAGGTTGGGATGCTGAGTAGTCGTATGGGTGACCAG 139624 36 100.0 39 .................................... GCGGCGAGCGCCGATGGCCTGCTTGATGATCCGGCGGCG 139549 36 100.0 37 .................................... CGGTACCGAGGGATCCTCGGAACCGGAACCGGTGCTG 139476 36 100.0 39 .................................... CGCGGCGATGTCGCCGGGGCTGCTCGGCGCCGGTGCCGG 139401 36 100.0 36 .................................... TCCGCGAGCCGGTCGGTCGCGTCGTTCAGCATCTCG 139329 36 100.0 38 .................................... GCGCGGTAGTTCGCGCGCATGGCGCGGCCGTCTTCGGT 139255 36 100.0 36 .................................... CCGTGATCGGGCTCCAGCGCATGTTCGGATCGGACC 139183 36 97.2 40 .............C...................... GAACGCGGCGTTGTAGATGACCACCCTGCGCCCGCCCAGC 139107 36 97.2 35 ..............T..................... CCGTCGGTGAGGAACACGATGCCGTCGTGGCCGGG 139036 35 91.7 0 ..........T.........-.............T. | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 98.7 38 CCGTCACCGGCTCTCCGAGCCGGTCCTCATTGCGGC # Left flank : TCGACAGTCCACTGTGGCCGAATTCATCGCCGCTCCACACCCGGCCCGACATCACCGAATTCCGGAACTGGGGAGAACACGACCGAGAAGTCCGCCAATACCGCGGAACCCCCGGCGTCCGCGGCCGCACCGACATGCTCCAACTCGTCCCCCAACGCCGCACCACCGCTGTGTTCATCGGCGACACCGCCACCACCGACAGCCGCACGGCTCACGGGCCCAGCCCACTCCACCGGTGACGCACGGCGGGTGAACGCTCAAGCTCACCGCGAAGCATCCACCCCGTGCTCCTCACCTGCACCAGGGAAATCCCGCTCCACACCACGCGAGCGGCTTGGCTCATCCCTCCCCAGGCGTAGCCGCTCGCATCCCGTTCCCGCAGGTCAGGAGCACTCACTGATCCGATACGATGCAGCACACGCTTTCCCGACGATCTCCACGCGGCACCGCTCGCAACGATCTTTGAAAACCCAGGTCACCGCGCCCGAAAATCCGGGTAC # Right flank : GGAGGGAAGCCACCGACGATGAGCAGGTTCGGCCCGGCGGCACCCCGGGCCTCAGCACCGGCTCACAGCACGGGCGGATTGATCATTGGTCGGCCGATCAGGATGATTGGCTTTAGCCTCGCCCGCGCTGCTCTTCTTCGATCCCGGCCGGTGACCGGCCACAGGTACACACCCCGAAAGCCGAGCACACCCCAGCCGACTTTCATCAGTGGCACAACTGCTGGACCACTTGACTTCGGAGGTTTCCGATGCCCATTCTCGATCTTGATCGGCTCACCGGGGAACTGTCCCCGACGTGGTCCGGATACCTGCGCGACTGGGACCGCGCACTGCGATCCGGCGATGACCTGCGACCGGGACCGGGCGCTGTTGTCGTGCTGTGCGTCCAGTGGAGTCAGGGCCAGTGAGCTGCTGGGCGTGACCATCGGCGACGTGGACTGGGCCGGGGCTCGGGTGTACGTGGCACCCACGGGCACCCGCTGCCTCAAGAGTCCCCGTAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCACCGGCTCTCCGAGCCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.90,-13.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 153825-153033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKC010000002.1 Saccharopolyspora sp. 7B contig_00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 153824 36 97.2 39 ..............C..................... TGATCGCCGGGCACCGGCGCTGGGCCGCTGCTGAACACG 153749 36 100.0 41 .................................... TGGACAAGACGCCCACAGCGTCGGCGCGCACCCGCTCCTCT 153672 36 100.0 40 .................................... CGGCCGAGGCGCCCCAGGGCACACCGAGCACGGAGTACAG 153596 36 100.0 38 .................................... GACGTGGTTTTTCGCCCAGTGCGTGATGGGGTACGGGC 153522 36 100.0 38 .................................... ACCCCGGGACGGCTGCTGCTGTGCCTGCAGGACACACA 153448 36 100.0 37 .................................... CTGCCAGGGCTCGGCGTCGGCCAGCACCGCGTTCAAC 153375 36 100.0 39 .................................... GTGGCAGAAGCATGCGTATCGCCGCCAACACGCTTTGAG 153300 36 97.2 42 ...........................T........ GGCGCGGAGGTGGTCCTGCACCGGCGTCCCGTCCGCGTGGTG 153222 35 94.4 40 ....................-..C............ CCGATCGACATCGCGTACACCAGCGGGAAGATCCGCTCAC 153147 35 91.7 44 ...............-..........C......A.. CACCCACCGCTGAGCACGGGAGCGAGGAAAGCATCTGCCTCGGC 153068 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 11 36 98.2 40 CTGTCACCGGCTCTTCGAGCCGGTCCTCATTGCGGC # Left flank : GGCGCGCAACACGAACTCCGCCATCGGACGATTAATCGTCCTCGGGCCTCCCGGCATGCCCGGGCAGACAGCGGTTCCCGACGGAAGCTGGGCCGCCGGGTGGGCACGAGCCGCCCGCGACCATCTGCGGGCTGTGTCGAAAGAACACGACCCGTACACCGACCGGATTCACCTGTTCTTGGCCGCACCGGCCGGCGTGGCGCTCATGCTCGGCCACCAGTGGAACCTCCTCCCCACGACCACGCTGTACGAATACCTGCCGCCGCGCGACTACGCAGAGACGCTCACCGTCCGCTGACCACGACACGGCCCACAAGCCCCGATGCGAGCGGCTCGGTTTCCGCGCACGCCAGGCGTAGCCGCTCGCTTCCCGTTCCCGCAGTTCAGGGGCGGTTCCCGGGACCGCTAAGATCCAGCCAGCGTTTACTCGCGATCTCCACCCGGCACCGCTCGCGACGATCTTTGAAAACCCAGGTCAGAAAACCGCTCAAGCAGGGTCC # Right flank : TCGAAATGACGTAGTGCGAGATCGCGCAGGCCGACTGCCGCTGGGGTTGCGCGCCACTTCCACATGCGGGGCCATCGCTGTCGGTGGAGTCCTCGGCCGTCATGAGGAACGCTTCCGCGACATCGCCGAGCGACCACCGTGCCGATGATCACGTCGTGGTCGTTCTCCTGCGCCGGGCGGTGGTCATCGGACAGGCTGCATCCTGTGTGGATCACCAGACCGGTTCCGGCCTCGGCGAGCGCCGTTCAGCTGCGGGCCGTGCCGGCTGCGCCGCTCAGCGGCCCAGCACTTGGCCTAGCCCCGGCCGCGACGGCTCGACCTGCCATGCCCACTCGCCCCGATGCGCGCGCGGAACCGCCCCGCTGACGAAAGAAATCGCCGTGAACCACACCGCCTACATCACCGCCTGCGTGGAGGCGATCCGCGCCGAGGGGCTGGTGCTGTGCGAGGTCGTCATCGACGACACCGCACAGCGCCACGCCAGCCTGGGCTTGGAACTG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCTCTTCGAGCCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.90,-13.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 155983-155648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKC010000002.1 Saccharopolyspora sp. 7B contig_00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 155982 36 100.0 35 .................................... GAGGGCATCACAGCCGTACCGGGCCGCCAGGGCGT 155911 36 100.0 42 .................................... ACTCATACAAGAGGCGCAAGGGTGGCTTCGCCGTCTCCACCG 155833 36 100.0 40 .................................... CACTCCATCCGAAAGGGAATCAATGCCGATCAGCAAACAC 155757 36 100.0 38 .................................... TGCTAACCCGCTGAAACTTGACGGCGTAGCCGATATTC 155683 36 69.4 0 GC.C.G........T..G.T.....G.T.C.A.... | ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 93.9 39 CTGTCACCGGCTCTCCGAGCCGGTCCTCATTGCGGC # Left flank : CCTGCAGCGGCGGCAAACCGCTCCCAGGCCGATCGACGACACGATGGACATGGCTGCCGAGGCGCGTCTCCTCCGAGTCCCGCCAATACCCCTGCGCCTGCTCCAGGTGGAACAGCCGGGGACAGTAGACGAACTTGCTGAGCGCACGCGCCGGGATGAAGAGTTCAGGTTCCATGACGGTGCCCCTGGATGAGCGGGCTTCCTGTGACCTCTCCAGGATCGCGCAGACCCCGCACCGCAACGCGTCCCTCGTTCGGGTTGTTCGCGGTCCGCAGACGGAGGCACCGGGTCGCCGGAAACCGGCGCCGGGCCAGGGCGTCTCCGACGAGCGGCGCGGTACCAGCCGAAGCCAGGCGTAGCCGCTCGCGTCGCGTTCGTGCAGCTCACGGGCGAGATCGACGTGGGGTAAGATCGAGCAACCGTTTCCTCGCGATCTCCGAACGACACCGCTCGCAACGATCTTTGAAAATCCAGGTCAGAACGCCCCTAAAGCAGGGTCC # Right flank : CCCGAGTACCACTCGCCCGATCGGAACCGGCGACGTTGTCGGTAAGTGGTTCGCCGAACCGGGGCTCGCCACCACTCCGCAGCAGACAGCCACTCACTTCGGGTGATCATGTTGGTACTCTGCGCGCCAAGCGGTTTCGGAAGCGGGCCGTTCACGAAGGGTAGGTGTCGAGGTGGCGCTTTCGGCGCGTGCTGCGGCGATTCGCGGTGATGACTACCAGCACGTCGTCGGCTGGTATTGGGCGTGCTGCATGTTGAACGATCCGGAGATCGGATCCATCGGCGTCGAAGATCCTGCGGGCGGCGCCTTCGACGATGTGGTGGTGCGGCGCGGTTCCGGACGAACCTCCTACTTCCAGGTGAAGACGTCCAACTACGCCAAGAGGATCATCGACGAGAACTACCTGTTCGCCAGCACTCCCAACGGCCGAAGCCCGTTGCAGCGCTTCCATTCAACCTGGCGTGCACTGCGCTCCACCAGCGACGACAACGAGTACGTCC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCTCTCCGAGCCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.90,-13.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 4 161258-161698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKC010000002.1 Saccharopolyspora sp. 7B contig_00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================ ================== 161258 36 100.0 41 .................................... GGGTGCCCCGTCGCGTCGAACCCGGCAGGCAGCACCGCCGG 161335 36 100.0 60 .................................... TCTCCGAGCCGGTCCTCATTGCGGCGCGCGCACGGGCGTGCAGGCGTAGAGCATCCCCAC 161431 36 100.0 41 .................................... AGGCGTCGGCCCGAGGTAAGCCGCAGCCGCAGCCGCATCCG 161508 36 97.2 39 ..............T..................... CTGCCAGGTGAAATTGAGTAGGGCGCGGATCGCCGCGGT 161583 36 88.9 41 .............C.......C....C...C..... ATGCACTCGTACCGCAGGAGGACGTACGCCTCCTGCGCCGC 161660 36 94.4 0 .....G........T..................... | T,TC [161671,161692] ========== ====== ====== ====== ==================================== ============================================================ ================== 6 36 96.8 45 CTGTCACCGGCTCTCCGAGCCGGTCCTCATTGCGGC # Left flank : CTGGCGAACACGATCCCGCCGACCGACGACCAGGAGAGCACCGAATTCGTGCCGAAGGACCTCGCGACACCGAGCAGCCCGCGCTACGAACTGCTCGGCCTCGATGCGCCCTGGTTCAGCTCGGCGACGGCGCTCGAACAACCCGGCAGGCCGGTGAGCCCGCGGGAAGTCGAAGTCGCCACGTCTATCTGCGAAATTCGGTACATCCCGGTCGTGTGGGCGCCCAGAATGGCCCTCGGGTTCCGGGATTGGAACGGATGACGCCATCCGGCACGTAGCGGACCGAGCGCGACCCGGCCGGGACGTCGGGGCGCCCTCGGCTGGGGCGAGCGGTCCGGTTCGGTCTCGGCCAGGCGTAGCCGCTCGCGTCGAGTTCGCGCAGCTCATGAGCGAGATCGGCATGCGGTAAGATCGAACAACCGTTTCCTCGCGATCTCCGAACGGAACCGCTCGCGACGATCTTTGAAAACCCAGGTCAGAACACCCTTACTGCCGGGTCC # Right flank : CTCCAACAAGGCGACAGTTGAGCCACTGGGAAGCACCTGCATCTGAGCGCGACCCAGCTAGTGTCGAGCGCCGAAGCTCGGCGGTGGCTTCGGGATGGAGGCGGGCGGCCGCGATTTCGGTGGAGAGGTTCCACGGGCGGAATTCCGGGTCTGGGGTGCCGAACGCGAGAAGTCCCTGGCGGGCCAGGTCGACGGCGATCTCCGCTGCGCGCGCAGCCCTTCTGGAGCGGCGACGGTAGCGAGGACCAGGAGCTGACCGATGGCGGTGATGTCGATGTAGTCGAGATCGCCGTCCGTGACGACGTCGGCGATCAGCTCGTCGCTGATCAACGTTTTCTTCTCGTTCCTACCCTTCGTAGTTGTGCGTTCTGAACCAGCGGACGTCTCCCGGAAAGAACCGGCCCGTTTCCTGGAGCACGTGATGCGCTCCTTCCCGGATCCTGTGTGCAGCTGCGTCCTTGTCGACAGCCCAAGGGATGAACTCGTGGTCGACCATGTCA # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCTCTCCGAGCCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.70,-13.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 63773-64167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKC010000019.1 Saccharopolyspora sp. 7B contig_00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63773 29 100.0 32 ............................. ACGGTGCGCAACGGCAGGGACATGCCCGGCGG 63834 29 100.0 32 ............................. CTGGACATCGCGGGTGAGGTCTACCTAGTGCG 63895 29 100.0 32 ............................. AACGGCAGCAGGATGCCGAGCCCGCCGTAGAT 63956 29 96.6 32 ............................T CACGGGTTCGGCGCGATCGAGGCCAGCAACAC 64017 29 100.0 32 ............................. CAGCAGTAGCCGAGCACCACTTGTTGTTTGAG 64078 29 96.6 32 ............................G CAGTTGGCCCTGTTCGCCCTCGATCGCCAAGT 64139 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTTCTCCCCGCGCCAGCGGGGGTGGTCCC # Left flank : ACCGCACTGAGCCTCTCCCGACGTGGCGAGCGCCAGCTAATCTGAATGCAGCATTGTGACCATCACCGGCAGTGCGAGCCGGTTCCCCGCACCAGCAGGGTGGCGGAAACCCTGATATTCTCAGCGCACAATCCTGCTCGTCGCGCCAGCGTGGGTGGTCAGCAGTACGTGAAGACCACAGACCCGCGACGGACCTACTCCTAGACGACATCTTCGACTCCAGGCAGCGATGAAGGGCTGGAAGCAGATCCGCCGATTTCACCGAGCGGAGGCATGGTGATTCGAGCTTCAGACGCCAGCTTGGAAACGCAAAGATCGAGAACCAGCCTCCCTGACCCCACTGCTTCCAGCAGCCGGATCAAACGCGACAACCACGCTGACACACAGACCCGATAGTCTCTTGCTCGTGCTTCCTTCCGTCGGCTGCCACGCACCGCGTTGCACCCTGCCCGGAACGTCTCAAAGGGATAACACCGCCAGATAGGACCAGCTCAGCAAGT # Right flank : CGTTCGGTTCCCAGCCCCTGACTCGGGATGCCGTTCTCCCCGCGCCAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCCAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23-1882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKC010000211.1 Saccharopolyspora sp. 7B contig_00211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23 29 100.0 32 ............................. GGTACGGACTACGACCCCGACCCCGGCACCAG 84 29 96.6 32 ............................G GTCTTCCGCCCGGAAAAGGACTCGGCCGGAGA 145 29 96.6 32 ............................G TTCTACCCCTGGATCGGGCCGTTCCTGTCCCG 206 29 100.0 32 ............................. GGTACGACACGGGGAGAGACCCGGGTTCGTTC 267 29 96.6 32 ............................G CGTTCGGTTCCCAGCCCCTGACTCGGGATGCC 328 29 96.6 32 ............................G GTTCCCCGCGCGCGGTGCGGGGAGGTGCTCGC 389 29 96.6 32 ............................G GTCTCGGCCAGCGAGTCGACCGGGTCGAGCCA 450 29 100.0 32 ............................. GTCGGCCAGCACATCCGGCACCTGATGTCCGG 511 29 100.0 32 ............................. GACATGACCCACCTGGACCGCGAGCTGGGAGC 572 29 96.6 32 ............................G CATGACGAACGAGGGCGACCCCTGCCCGTCGT 633 29 96.6 32 ............................G TTCTCGCCGGTGTTGTCCCCGGCGATCATCTG 694 29 100.0 32 ............................. TCGGTGCCGAGGTCGATCCGCAGGACTACCTC 755 29 100.0 32 ............................. GTCGCCCAGTGGCTCGGCGAGCGCGTGCTCGC 816 29 100.0 32 ............................. CCGGCCACGATTGCCTGACGGTGTCGACCTCG 877 29 100.0 32 ............................. GCCGGGTACCTCGCAGGACGGGCAGGTGATCA 938 29 89.7 32 A........................C..T TCCGCCTCCTCGATCCCCGCTTCACTCGCCGC 999 29 100.0 32 ............................. TTGCCGCGCGTGGAGACGATCGAGGCGATGGT 1060 29 100.0 32 ............................. CAGTCCGAGCCGCAGCCCGCCGTTCTTGAAGT 1121 29 96.6 32 ............................G CCGTGGTGCTCGATCTCATCAAGTCGGGCCTG 1182 29 100.0 32 ............................. TCGTCGTCCGGGATGTCGTCCACGAGCATCCG 1243 29 96.6 32 ............................G CGCCACTTGTCGGCGTGCCGCTGTGCGGCGGA 1304 29 93.1 32 .........................A..G CGCTGTTCCCACTCCTCGACGTCGGCTGTCGT 1365 29 100.0 32 ............................. ACCATCAGCGGCGCGCACGAAACCTCCGAGGG 1426 29 100.0 32 ............................. GCATCACGGTCTCCTCGGTCGGTTTCGGTGAG 1487 29 100.0 32 ............................. ACCTCCATCGGCACCTGGTGGTCGAGACCGAA 1548 29 96.6 32 ............................G AGGCAGCGGAGGCTCGCCAGCTTGATCCAACC 1609 29 93.1 32 ...T........................G TCGTAGGGGTTCGTCATCGGAGTTCTTTGATC 1670 29 89.7 32 ...T.T...................C... AGTTCCGACCCGACCGCGACCAGCGCTTTCGT 1731 29 82.8 32 .C.T..........G......A......T AACCTCGTCGCGGCAGTGCTGCTGGATCCGGC 1792 29 86.2 32 ..CT........T...............G ATCCTGCGGTACTCGGCGTGGCGGCGTGGTGA 1853 29 75.9 0 ..CT...T..............A.CA..G | A [1872] ========== ====== ====== ====== ============================= ================================ ================== 31 29 96.0 32 GTTCTCCCCGCGCCAGCGGGGGTGGTCCC # Left flank : TCCCCACCCCCGGCCGCGCCGCG # Right flank : GAACTGATCTTGGCCGCTTACGACGGCCGACTCGGAGGCCGGGGGAGCACACCGGACGGCGTGCACCCCCGGCTGAGCCCCACTAAGCGGAGACGCCCGTCGGGCAGGTGCACCGCAACGAGCAGACCGCGTCTACGTGGGGAGAACGCCCAGACGGGTGCACTGTCGAGCACCAAACCGGACCACCCCTGCCAAGCAGGGAACACTCTGACCTACACCAAAAGTAGCCAAAGTGGTCACACTCAGCAGCCCATGACGTGCAGAAACGTTACCTGACCACCCCCTGTAGTCGACCAGTGCCGCCGTGTGGCTATCCTGCCTTTCGTCAACGTTTGTTGCTCATCGACGGGATTGACGCGGATGACACGACGGAAAGAGCAGGGCCCACGGACCGGTGCCCGTTGCCGCATCACCTCGTTGGTGCGGCCGTGGCCGCACTCGGGGTACGGGACATGCACTACTCGCCCGCGATGCGGGACGGGAAGGTCCACGGCTGGTCG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCCAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12485-13239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKC010000211.1 Saccharopolyspora sp. 7B contig_00211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12485 29 100.0 32 ............................. TTCTGCTCCCACGCCGCCGAACGCTCCCGCTT 12546 29 100.0 32 ............................. CGGCGTCAGATCTCCTCGGATCCGGGGAAACG 12607 29 96.6 30 ............................G GTTCGAGCAGGGTTCCCATCTCGGCGGCTT 12666 29 96.6 32 ............................T CGCCCGGCAATCCCGCATGGAGCAGGGGCTGC 12727 29 100.0 32 ............................. AGGTCGCCGCGCCGGTTGATCACCGCTGCGAC 12788 29 96.6 32 ............................G CCGAGGCACATCGCCAGTCGGCGCATTTGCGG 12849 29 96.6 32 ......................C...... GGTACGACACGGGGAGAGACCCGGGTTCGTTC 12910 29 93.1 32 ...T.......G................. GGCTCACGATCCGGACCAGGGGGTGAGCCGTG 12971 29 93.1 32 ...T.......G................. GTCCTCGCGGCTCTGCACGAGCCCATCACCGG 13032 29 72.4 28 ...T.......G.........TCCCC..A GGTCGCGATGAGCAAGAAACCCTTGAGC 13089 29 89.7 32 ...T.......G.............C... GGCGATACCTGGCAGGTGCTGGCCGTCGGCCG 13150 29 93.1 32 ...T.......G................. CCTGACCTGGATTTCGACAACGAACTGGATCG 13211 29 89.7 0 ...T.......G...........C..... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 93.7 32 CTTCTCCCCGCACAGGCGGGGGTGGTCCC # Left flank : GACATTCACTACATCCTCGGAGAGCATGATCTACCTAAAGACGAAGTACCCACCGGCGTCGTAGACCTCTGGGATCCTGATGGAAACGTGCCAGCCGGAGTGAACTACAGCGCCCTCGACGAGGACCCCGGCTTCTGATGGCGCACTTCGCCGTGATCAGCACAAGCGACCTGCCCGACGGAACCCGAGGCGCTCTCACCCGCTGGATGATCGAACCCGCACCAGGAACCTACGTCGGCACACTCACCGCCCGCGTCCGCGACTACCTATGGAACGCCGTCCAAACCAGCATCGATCAACAACACGGCTGGGCCGCCCTCATCTACAACACAGACACCGAGCAGGGATACGCCCTTCGCACCCACGGACTCGGCCAGCACCACCGCACCGTCACCGACTACGACGGGCTCTCCCTCATCACCTGGCCGATCGCCAGGGACAACCAGCCCAGCGAAGATAACAAATCAGCATCCCACTGATGTTTCAGCAGCTCAGGAAGC # Right flank : CCCGTCGTGGGTCTTTCGTAGGAACGGTGTCTCCAGCGTGTTGATCAGTAGGTTTCAGCGTCCGTCCAGCGGTCACCGAAGGTGATGACAAAGGCGTCGAGGACTGGATTCCAACGCATCGTCCATCGGGTGCGGCCGGCTCCGGTGGCATCCAGGCTGCGGGTTACAAGGTACAGGCATTTCAGCGCTGCCTGTTCGTTGGGAAATGTCCTCGCACGCGGACCGCTCGGCGATAGCGAGCGTTGAGTGCTTCGATTGCGTCCGCCACTGACTTGCCTGAGGTGACCGAACTCACCAAGAACCCCCGCGCATCCTCGAACTCGGTGTAGACCGGCACAACAAGCCGATCCCGCCCATCGCCGGAGTCGTCTTCCGGTACGGACTCGGCGATAAATGCAAACACTCCGTCCGGGACAGTGTCTCTGCACGCGACCGCTGGCAGATCTTCCGCCACCTGCACCCCGCGCTCGCCGACTTCGCCACCCGGGTCGAGCCCTACC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCGCACAGGCGGGGGTGGTCCC # Alternate repeat : TCCCCGCGCAGGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2524-3289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKC010000005.1 Saccharopolyspora sp. 7B contig_00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2524 37 100.0 35 ..................................... ATCGATCACCACCGTCTCGCGCAGCTGGAGCGCGA 2596 37 100.0 36 ..................................... CAGTCCAACCGACGTGGCCTCTCGGCCGATGGCCGA 2669 37 100.0 35 ..................................... TACGCCTAGTCGTCGGTCTCAGACCAGCGGTCGCG 2741 37 100.0 37 ..................................... CGGTCCGCTGTGGACTCGGGGGCGTCGGCCGCCAGGT 2815 37 100.0 34 ..................................... ACCGGCGTGCCCCGCCGCGCCGCCGACGCCCACA 2886 37 100.0 36 ..................................... CCGAACTCGACGGCGTCGTGTTCGCCGACCCCAAGA 2959 37 100.0 36 ..................................... CCGTTTCGTCGGACCGAAAGGGTCCTCTGCGGGCGT 3032 37 100.0 35 ..................................... GACACCGGCACTCCTGGTGAGCTCCGCGGGCAGTT 3104 37 100.0 37 ..................................... GACCCGGACACGCTCACCCTCGTAGACCGGGACCCCA 3178 37 100.0 38 ..................................... TACTGCTGGGGAGAGGCCACGATCGCCGACGTCGTGCT 3253 37 97.3 0 ...........T......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.8 36 GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Left flank : TCGGTGCTCGTGCGACGCACGGCGACGACCAAGGCAGCAGCCTGCGGAAGAACGTCGCGCACGAGCTGGGACACCTCCAACATCCGCAGCCGGTAGAGCTGGTCGGCGGCGTGCTCGGCGGTCTCGTCCGCACGAGCGATCCGCTGCGCCAAGTACCGCGAAGGAACAACCGACAACATGACCTCACCTGCCCTTTCTTGTGGAGTGGTCCGTTCGCGCAGCTTGGTTTCGACGCAGTGCCGGACTCTGGGGAGTGGGGCCAGCGACTGAAGTCCTGCCGACCACGACCCGCTTCTATGAACCAACCGGGGTGGCTGGTGAGTCGGTTATGAAGAGGAGCGGCCTGGAGGCTGGATGTCGGTGACGTCCGATGTATGTTCGGTTCGGAGCCGGTAGCGTGGTGCGACACGCCTAGGGGATCTGAAGTGAATTCCGGGCGTGTCGGTCACAGCCGGATAAAGTAATCCCGTCGAGCGGGCTGTTCTGCCTGATCGACAAGG # Right flank : CCGGGAGGTTCTGCCGACGCTGCGACTGTGAGCAGCCGGTGTGATGCCGACGCGCCAGTGCCGATGGGACGGGACAACAGGTAATCGCTGCGGGTGTGGTTATCTCCGAGGATGGCTTCGTCGTTGCCAGCCGTGGTGTTTGCCGCCGGTGATGTGGGTGAGGCGGTCGGCTTCGGCGGGGTGGAGCAGGTGGAGGGCGTCGTTGTTGCTGGCCCATCGGTGTTCGGCGACTTCGGTGGGGTCGGGGTCTGGTGTGGTGGTACCGGTGAGGTGGGCTTCGAAGAGGAAGTGGACTTTGTTCTCGCCGGTGGATGATTCGGCGTGGGAGGTGCCTGCCCATAGCAGTTTCCCAGCGGTGGTGGTGAGGCGGAGTTCTTCGTGGACTTCGCGGGTCATCGCCTCGGGTGGTGTTTCGCGTCCGTAGGGGTGGCAGCGTCCGCCGGGGAAGCTGAACTGTTCGTCGTCGGGTCCGCGGACGAGTAGGACTCGTCCTGCGGCGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 16071-16845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKC010000005.1 Saccharopolyspora sp. 7B contig_00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16071 36 97.3 35 ...........................-......... TTCGGGGTCAGCCGGGCACCGCAGAGCGCCCAGCC 16142 37 100.0 37 ..................................... GCCGACGGGGCCGGGCAGTGCCAGCCCCCGCACCTCG 16216 37 97.3 35 ...........T......................... TCCCATGCTCTCGAAGTCGCCATCATCGTTCGTTA 16288 37 100.0 39 ..................................... GCTCGGGCCAACGTGAACGGCCTGTACACCCAGATTCAG 16364 37 97.3 38 ............T........................ CTCTCCGCCACGCGTACGGCTCCTCGCGCTCGACAGGT 16439 37 100.0 36 ..................................... GAGTAGAAGATGCGCTGAGTGGCCAGCGCCTGGAAC 16512 37 100.0 37 ..................................... AGTCGGGTCCGCGGATCAGCGGAGGGCTCGGTCCGCG 16586 37 100.0 37 ..................................... GACAACGCTGCCGTCGCGCTCGCCGAGGGGGCGGCGC 16660 37 100.0 37 ..................................... GAGGACTGCGGGCACATCGCGGTGCAGGGGCAGACCC 16734 37 94.6 39 .......T............................T CGCTGCTCCAGGTATCCCCTAGTTGGCGTTGACGTCGGC 16810 36 91.9 0 .................-........C....A..... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 98.0 37 GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Left flank : CCACCACTCGGGGGGCCTGGACACCGTCTCCGACGACGCCCTCGACGGCGACGACCACTATGGACTCTTGCTCTGGCCCGAGCCCTACCGTGAGCCGGAGGTCATCAAGGCTGTAGCCGAGTGATTTCCGTGGCGCGTCGCCCATGGGTTTGGGCGCCGTCGGGCGACAGCTGGCGTCGAATCCCCGTTGCGAGAACTTGAGCGTGGAGCGCCTGTCCTTCTTTTGTCGGGGACGCGCATGTACTTCGTGCACGAATGCTGTTCCTGTTGGCCTTGACGCGATATGGCGCGTTGCGTGCCCGAGGGGTATCACGCCACGTCCTTCGCCACGTTGGCGGAACATGCATCCCCGACGGACGTGGACCCGTGCTGTTAATGCTGGTTCGGAGCCCAGAGCGTGATGCGACACGCCTGGGGGTTCCGAACTGGTTCCCGGGCGTGTTGGTGACGGCTAGGTAACTTCTCTGCTGAACCGGGGATGTTATCCCTGATCATGCAGG # Right flank : CGTGTGGGCGTTTGGGCGGTGACTGGTAGAGGCCAAGATGTAGAGCTTCGTTGACAGGTCGCACCTGCCCTCCTGGGGTTTCCGCTGTAGTGGAAATACGGTCGAGGTAACGTGATCGAACTTATTGGTGAACGCCTGGCCTTGCCCTATTTTGATGTTGCGAATTGGCGAAAAGTGGGCTTGCTGGGGAAGTGTCTCTTGCTGGAGTAGATCTGTGCCAATAGTTGATTCCTGTTTGATCGGTTGGTGGCGATCCGGTGGATTTTACGAGGAGAATCGCCGAATCTGTGCTTTTTTTCGTGATTTCGGTGTTGAACCGGAAGTGTTAGAGCCGCTTCCGATGGCAGCGTTGAGGAACGAGGCAATAGGCTCTCCCCTGTGCCATCAGGTTGCTGCGGTCGACAGTCGTGGCAGGGTGTCCGACAAGCTGCTGATCAGCTTTCTTGGCTGGCAGCCTGGCGACCGCCTGGTGATCGAACTTGCCGGGAGCCTGGTGGCTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //