Array 1 246903-244944 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPV01000008.1 Salmonella enterica subsp. enterica serovar Infantis strain 1023 NODE_2_length_309675_cov_32.6752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 246902 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 246841 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 246780 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 246719 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 246657 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 246596 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 246535 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 246474 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 246413 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 246352 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 246291 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 246230 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 246169 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 246108 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 246047 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 245986 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 245925 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 245864 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 245803 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 245742 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 245684 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 245623 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 245562 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 245501 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 245440 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 245379 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 245318 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 245257 29 100.0 11 ............................. CGGCCAGCCAT Deletion [245218] 245217 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 245156 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 245095 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 245034 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 244973 29 93.1 0 A...........T................ | A [244946] ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 264801-263185 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPV01000008.1 Salmonella enterica subsp. enterica serovar Infantis strain 1023 NODE_2_length_309675_cov_32.6752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 264800 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 264738 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 264677 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 264616 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 264555 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 264494 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 264433 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 264372 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 264311 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 264250 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 264189 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 264128 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 264067 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 264006 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 263945 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 263884 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 263823 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 263762 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 263700 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 263639 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 263578 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 263517 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 263456 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 263395 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 263334 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 263273 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 263212 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //