Array 1 161019-161166 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJQ01000006.1 Cronobacter sakazakii strain cro184 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 161019 28 100.0 32 ............................ TGTGTGCGACATGCTTCGCGGTCGAATATTTC 161079 28 100.0 32 ............................ ACATTCCACTGACTGTCTGCATCAGACCCGTC 161139 28 85.7 0 .....................CGGA... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGTAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCGCGTTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGTTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAAACGACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGATGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 152041-153534 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJQ01000001.1 Cronobacter sakazakii strain cro184 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152041 29 100.0 32 ............................. CTCCTTTCGTCAACTTCGCCCGGCGCGATATG 152102 29 100.0 32 ............................. GTGTCGGGTCGGTGTCGCTGTCGGCGGCAATC 152163 29 100.0 32 ............................. GCTAATATCTGAATAGCTGCGCCCTATGTTGA 152224 29 100.0 32 ............................. CGCGCGCCAACTCCATGAGGGACATCCCGTTA 152285 29 100.0 32 ............................. CGTTTTCAGGTTTGTCATTCGTTGATCCTTTA 152346 29 100.0 32 ............................. GTGCATCAGGGGGCGGCGCGAACGGATCAAGA 152407 29 100.0 32 ............................. CGTTCATAGCCGCGGAGCAGCGCTAGAGCGTG 152468 29 100.0 32 ............................. CAGCGAGTACCACAACAGGGCGTTTTCTGCGT 152529 29 100.0 32 ............................. GTGTTGTTGACCATAATCACTTCGGGGTGAGC 152590 29 96.6 32 ............................A GCTGCATGGCATTTGGCAGGTCGGAAACCTGG 152651 29 100.0 32 ............................. CGTCCGCTTTACCATTCTCAGATGGTCGTCAC 152712 29 100.0 32 ............................. AGTTTTGCCATCCCTTGGGCGGTATACATTCG 152773 29 100.0 32 ............................. ATCAGCAATATTCTCGGCATTGCAGAAAAGAC 152834 29 96.6 32 .T........................... CAGACGGCTGGGAATTTACGGATAAAAACACC 152895 29 96.6 32 .T........................... CGCGGCTCCATTCAGTCCGCCCGCGACGTGAC 152956 29 96.6 32 .T........................... GCCAGGCACTGGCTATCTCTAACGGTCGCGTC 153017 29 96.6 32 .T........................... TGGCGGGCACGCCGGTCAAGCACTACAAAATT 153078 29 100.0 32 ............................. TAGGCGTTTCAATCGGCATTTTTCTCACCCTC 153139 29 96.6 32 .T........................... GCCCGCGAAATTGAGGGGCCGGAGGAGAGTTA 153200 29 96.6 32 .T........................... TAATTTTAGCGGCTAAAATCATTGACCGCCCC 153261 29 96.6 32 .T........................... CAGTTTAATTTAGAGCGGCAGGTAGTATTGTT 153322 29 96.6 32 ............T................ ACTACACATGACCCGCTTATCACACCAAGCGA 153383 29 96.6 32 ............T................ TCGCCGCGCATGAGCTGTGTCAGTTCGGATGT 153444 29 96.6 33 .T........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 153506 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.5 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : GTACCTTGAGAAAACCGCGCAATCTGTGCTGGTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGTCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCCGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180222-181166 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJQ01000001.1 Cronobacter sakazakii strain cro184 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180222 29 93.1 32 .T..........C................ CGCGGATACACAACGAGGGCGGCGAAATTAAG 180283 29 93.1 32 .T..........C................ TGCTCAGTTAGCTCTGAGGAAACTCAGGGGAG 180344 29 93.1 32 .T..........C................ CCCGCACCAGTTCTTACAACCGAGGGACGCCT 180405 29 93.1 32 .T..........C................ GAAACAGCCAATCAATGATGCCTACATCCGGT 180466 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 180527 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 180588 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 180649 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 180711 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 180772 29 100.0 32 ............................. TGAAGTTATCATGCCAACGCCATCTTGACGAT 180833 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 180894 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 180955 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACCCCATC 181016 29 96.6 32 ............C................ TATTTTTAACTCAGATCGGCACCGATACAGCA 181077 29 96.6 32 .T........................... GCGTACGAACGTTCGCTATCAATGATGGCGAA 181138 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.8 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACTGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCCGGTGGGTGCGCTTTGCTTATCCGACCTACATAAATTGCCAAGCCCGATGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //