Array 1 163357-160826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNI01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163356 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163295 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163234 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163173 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163112 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163051 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162990 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162929 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162868 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162807 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162746 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162685 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162624 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162563 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162502 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162441 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162380 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162319 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162258 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162197 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162136 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162075 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162014 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161953 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161892 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161831 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161770 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161709 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161648 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161587 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161526 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161465 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161404 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161343 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161282 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161221 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161160 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161099 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161038 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160977 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160916 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160855 29 93.1 0 A...........T................ | A [160828] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181479-179864 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNI01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181478 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181417 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181356 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181295 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181234 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181173 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181112 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181051 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180990 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180929 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180868 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180807 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180746 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180685 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180624 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180563 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180502 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180441 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180380 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180318 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180257 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180196 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180135 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180074 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180013 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179952 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179891 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //