Array 1 526040-527087 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIPSQ010000003.1 Pseudomonas aeruginosa strain KPA55 contig00003, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
    526040	    28	 100.0	    32	............................	AAGTCGGGATTGGTCGCTTACGGCTACTACAC	
    526100	    28	 100.0	    32	............................	GGTGCGCAGGTGCAGACCCCGCATTCGTTTCA	
    526160	    28	 100.0	    32	............................	GTTTGGTACCATTATTTCGAGCTCGAGCACGA	
    526220	    28	 100.0	    32	............................	TCATACTGGGTGCCGTTCGCCTTCGCGATCGC	
    526280	    28	 100.0	    32	............................	TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC	
    526340	    28	 100.0	    32	............................	TCGGTGACGCTGGACTGGTCGAGGGGCGTAGA	
    526400	    28	 100.0	    32	............................	ATATCCAACACCGGGACGGGAGTCCGATCCTA	
    526460	    28	 100.0	    32	............................	TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT	
    526520	    28	 100.0	    32	............................	TCGGACAAAGACAGCCTCCGGTCATAGGGTAG	
    526580	    28	 100.0	    32	............................	TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT	
    526640	    28	  96.4	    32	.............T..............	ATACTGACTCAGCCAGGGAAAAGTCACTTGGA	
    526700	    28	  96.4	    32	.............T..............	AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT	
    526760	    28	  96.4	    32	.............T..............	TGGTCGAACAGATGGCGGTCCTCGGCCAACTG	
    526820	    28	  96.4	    32	.............T..............	ACGTCGGAACGCAACTACCTGACCGCGTTGGT	
    526880	    28	  96.4	    32	.............T..............	CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA	
    526940	    28	  96.4	    32	.............T..............	TCGGCGAGGCGATCGATCATGCGAATCAGCAA	
    527000	    28	  96.4	    32	.............T..............	ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT	
    527060	    28	  96.4	     0	.............T..............	|                               	
==========	======	======	======	============================	================================	==================
        18	    28	  98.4	    32	GTTCACTGCCGTACAGGCAGCTAAGAAA	                                	       

# Left flank :   CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAGCGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA
# Right flank :  CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCG

# Questionable array : NO	 Score: 6.12
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTACAGGCAGCTAAGAAA
# Alternate repeat :   GTTCACTGCCGTATAGGCAGCTAAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [9,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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