Array 1 998621-999428 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061511.1 Mixta calida strain 5098PV chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 998621 28 96.4 32 ...........C................ ATAAAGGTAAAATATTATCATTTCGTAAATTA 998681 28 96.4 32 ...........C................ AGAAGCGTGTTAACTACTATCTGAACGGTGAC 998741 28 96.4 32 ...........C................ ATTTCGCGCCATGACTTCAGCACCAGCGTTTC 998801 28 96.4 32 ...........C................ CTGTTGATAGCGCGACCAGCGGCAACGCTGAA 998861 28 100.0 31 ............................ AATGCCGGATGATAGAAGGTCAGCGTGTCGT 998920 28 100.0 32 ............................ AACGAGCAGGAAGATGCTGACCTGGTTGAATC 998980 28 100.0 32 ............................ AACGACCCCCGGCGCATTTTGAGGCTTGATGA 999040 28 100.0 32 ............................ TGAATATCCTTGAGCTGTTTCTCCAGTGTCTT 999100 28 100.0 32 ............................ TCCGGCTCCCCGCCGTTGCCGGGTCGTCAGCC 999160 28 100.0 33 ............................ GGCAAGCACCAGGAAGGAGAGTGAGATGGCAAC 999221 28 100.0 32 ............................ AAACTGCTGTACAAAACCGGCACGCTGAAGAA 999281 28 100.0 32 ............................ GCAGCAGTAACTCAGCAAATCACCGAAGCAAA 999341 28 92.9 32 ............C....T.......... AGTGCTATGATTTTATTTTTGTGATAAGCGGC 999401 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCATCGGCTACTGCGGCACCGAACTGATCCGCCGCACCGTCGGTATGTCGCACGTTGCGGATATGAAAAACATCCCCGATCCGGCGATGCATACTGAATGCGTGCACCACGCGATTGGGCTGGGCAGGGCGCTGATTGTCGCCGCACCTAATATCGATACCGTCGATACGCTGATCGCTCGAATTCGCCAGCACGGCTAAGTTATTTATTTGATAAGAGCGCGTCTCGCCTGCCAGCGAGGCGCGTTTTTTATGGGCGCGTTATTCAGGTTTTAGATTGGCTGCGCTTGTTGTTGGTTGGATGGTTTGTTGGAGGCGTGTCTGCCTGCGGATGGGGTGGATCGGTAAGGCATCACGCGTTAACAAAGAGAACCCTTTTTATTAGTGCTAATGTAATTCATTGATTTTACAGGAAAGAAATTAAAGAGCAGAAAAAAGGGTTTTACGGCTGAAAAAGCGGTATCTGTTTATTTTGTAAAGGTTTTGGGGTGGATTTGAACG # Right flank : ATGAAAACGGAAGCGCGCCGCCGCGTATCTGCAATCTATTGTGCAAAAAGATGCAGATCGCGCCCCTCTACCAGACATCCTGCTGAATAAAGAAGAAATCGAATTTTTACTATGCATTGAAAGCGATACGAATCACAAAAAAACTTAACCAGGATGTTATAAACTCAACGAAAGTTTAACCCATCGCAAAAAGGAGTTTGCATAATATGCAGGAATTAACCATTTCTCATTGCAATGTTGTGTCTGGCGCTGGCGGTAATTATCAAATGGCCGTAAATCTCGAAATAGCCCAGGTAATCGCTGCAAAAATGAATAATTGCAATGTGAAAGATCTCACGGCAAGCATGATTGCGTCTGCCCTCACAGGCGGCGTCATTGGCGCATTAGGCGGCAGCGTAACCATTCCCGTTGTAGGGGCTGTGCCAGGCTGGGTATCCGGCGCAGCGACGGGGGCTGGAATGGCTGCTTTTACATATGGAGTTCAATGTTGGTGGTAACGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1009175-1010162 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061511.1 Mixta calida strain 5098PV chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1009175 28 100.0 32 ............................ TTCCCCATGAAAGCTGCGTAGCCTAACGGAGC 1009235 28 100.0 32 ............................ TATATTTTTTTTAATTGCCGGAATTGTATTTT 1009295 28 100.0 33 ............................ TGCCGCCGGAGTAACTCACCACGGTACATGGAA 1009356 28 100.0 32 ............................ GTGAAAATCAACACCATTGCATTCCAGGAAAA 1009416 28 100.0 32 ............................ AGTGAAATCAGCCGCCGCCGTCACTTTCACCT 1009476 28 100.0 32 ............................ ATAAAAACCATCGCTTTCTCACCGCTGTACTG 1009536 28 100.0 32 ............................ ACGATCCGGTGGCGTTGCGCAATGAGCTGGCG 1009596 28 96.4 32 ............G............... ACTCTTCGACCTCTTCCGGCGTGTACACCTTG 1009656 28 100.0 32 ............................ AGTGCATCACTTCTTCCATTGTGACGGTGGTG 1009716 28 100.0 32 ............................ TGACCGGTTCAGATCTGCGTTGTTCTGACTGA 1009776 28 100.0 32 ............................ TCCCGGCCAGATGCTCAGATTCATTGCGGATC 1009836 28 96.4 32 .......A.................... ACAAACGCCCAGGCTGTCCAGAGAAACAGAAA 1009896 28 100.0 32 ............................ CAGCGGTCGTTAGCCTTTGCCTCCAGGTCTGT 1009956 28 100.0 32 ............................ GCCATAAACCTTGTTAAAGGGATCGTTACCGT 1010016 28 100.0 32 ............................ TTGAACAGTTTGCTGATCGCCGCCTCAAGGTG 1010076 28 100.0 32 ............................ ATTGGTGTGTTAGCAGACGCCGCCGGAGTTTT 1010136 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTCGGTGAAAAAGGGCTGGCTCACTGAAGAGCAGGCGAGTGAGCGTATCCCTTACGCTGCTGAGCAGCGTAGCCAACTGCCCTATATTCAGCTGAAAAGCGCCTCTACGCGGCAGAACTTTTTGCTGTTTATTGAGCATGGCCCGCTGCTTAACGAAGCCCACAGCGGCACGTTCAGTGCCTATGGATTAAGCGCGACCGCCACTATCCCCTGGTTTTAATCTCTTCGCGGCGCCGTTGATGAAGCATCAGTCACAGACGCCGCGCCTTCCCGATACGCCGTTAGCGAGCAGTGACAGGCATCCTACGCTGGCTGGGCGGATAGCGGTAACATTTTTGTTGGGTCTGGAGACCAAGAAAAGCATGGACAAACCCTTTTTTTGACCTCAGACGTAAGTCATTGAATTTTAATTACGGCTAACAGGCCGGGCAAAAAAGGGTTTTTACAAGAAAACAAGGTTAACGTCTTGAAAGTTAGCGGGTTAGGCTTTATTTTCTACA # Right flank : ACCCCCACATCCCCTCCAATAAAAAAGGCCTGAGCATAAACACTCAGGCCTTGCGTGCCGCGCCGTTGAACATCCGGTCTCCCACCTTCCTTCGCAGCGCGGCGTGTTGCTGCTTCGTCTTTTTTATTGGCTGTCAGGCGGCTTCGATTTTACGAATCTCGGTCTGCTCCTGCTTTACCGGCTGGGTCGCCAGCGCATCCGGCTCAAACTCATCCACGTTAATCGAACGCAGGCGGCTCACTTCGGCGCGTTTCAGCACCTCTGCTTCCTGCGCGTTAATCCAGCCTTCCTGTAGCGCGCGCTGCGCCAGCTCGTCAAGACGGGTAAAGGACAGATGCGTTTTCAACTGCTTGTTGAGACGATCGTGAATCACTTCCGCCGCCATTACATCGTGCAGCGCAGCCTCCAGCTGTCCGGCCGGGTTATGCTCGCTCGGCGTCAGGTATTGACCGCGACCCAGACGGGAACGGGTGGCGGAGGGCGTTTGCAGCAGCTTTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //