Array 1 86918-85286 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALXP01000028.1 Neisseria meningitidis NM140 NM140.contig.27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 86917 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 86851 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 86785 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 86719 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 86653 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 86587 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 86521 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 86443 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 86377 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 86311 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 86245 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 86179 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 86113 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 86047 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 85981 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 85915 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 85849 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 85783 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 85717 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 85651 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 85585 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 85519 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 85453 36 100.0 30 .................................... CGATGTTGTGATCGCCTTCCTGCAGGCGTA 85387 36 100.0 30 .................................... CCAAATCGGCAACGGTAATGGTTTCGGGAA 85321 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 25 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //