Array 1 2461452-2460623 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031447.1 Austwickia chelonae strain LK16-18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 2461451 28 100.0 29 ............................ GTCATGCGCCGTTTTCGCCGTACCCCCCC 2461394 28 100.0 33 ............................ CCGAGGCCGCGTCCGCGGAAAACCACCTGCACA 2461333 28 100.0 33 ............................ CTCCCACGCCAGCAACCTACCCCCACGAACCAT 2461272 28 96.4 33 ..............A............. GTACACCATCGCAGGCGCGTAATGGCCGTCCCC 2461211 28 100.0 33 ............................ GGCCCGTGCCATGGCCAAGAAGAACCGCCAGAA 2461150 28 100.0 33 ............................ CTCACTTCGAGCCGCCTTCGCCGTCAAGGCTAG 2461089 28 100.0 33 ............................ TGTTTACGGCCATTACTAGGATACCTCCGTGGT 2461028 28 100.0 33 ............................ CTACTGCGCGCTGACCGTCACCCCGCTGCGCTG 2460967 28 100.0 33 ............................ GCGGCATCCGTCCGAGACGCGCTATCATCCGTG 2460906 28 100.0 33 ............................ CTCCACGACGATGGGGACGTTCTGACCTGCAGG 2460845 28 100.0 33 ............................ GGCCGCCTGATGCGCACCGTCGAGTTCTGGGTC 2460784 28 100.0 45 ............................ GGCCTGGTATCAGGACTTGCCCTCCGAGGAGGAGGACGAGATCCG 2460711 28 96.4 33 ......................C..... CCTGACCGACGCGTACCTGACCGGCGCGTACCT 2460650 28 96.4 0 ......................C..... | ========== ====== ====== ====== ============================ ============================================= ================== 14 28 99.2 34 GTGAGCCCCGCACCTGCGGGGATGAGCC # Left flank : CACCGAGCCGTCGCACGAGCCAAGAACGACGGCGCCCGACGCGGCTACGTGTTCTTGCATTCGGCCGTGGACGGGTTCTCAAGGATGGCCTACACCGAGCACCTGCCCGATGAGAAAGGCGCGACCGCGGCCGCCTTCCTGGCCCGGGCCAAGGTCTGGTTCGCCGCGCACGGCATCGGCCACGTCCACCGGATCGTCACCGACAACGGGTCCTGCTACCGCGCCAAGGAGTTCAACCACGTCATCGGCAAGCTGACCCGGCATCAGTACACCCGGGCCTACACGCCCAGACACAACGGCAAGGTCGAGCGGTACAACCGGATCCTCGCCGAAGAAGTGCTCTACGCCCGCGCCTACTCAAGCGAGGCCGACCGCGCCACAGCCATCGCGATCTGGAACCTGCACTACAACTACCATCGACCCCACAGCGCCGCCGGAGGCCAACCCCCGGCCACTCGCGTCCACGCCACTGTCACCAACGTCCTGCCCAGCTACAACTA # Right flank : CAGATGTGGAAACCCCGCGTCATCGTCGAGTCGACGTCCACGCTGACGCTGAGCAGGCAATGGCCGTGATATATCGATGACCACGGAGGTTTCGACGGGGTCGAACTTCTCGGGTCTCTCGGGGTATGTGCACAAGCCGGGCAAGTACAACGAGCACGCCTACACGATGCACGAGGGCAACCTGCGTGGGTGTGGTTCGGACGTTTCCTGAGCGAACCCACCTCACCGAGCGTTGCCGAGGGTAGTCACATCGACCGGCTGGTTCACGTAGCACCTATGCACTGACCAGACGGAGCTCACTTTCGGGGGTGAAATGCATGGGATTGCGTAGCGTAGAAAAAGCAGGAAAGCGCTGTCTGGTCCGCTCTCAAACTGGCAGTTCATGGTCAGACCTGAAATCACTACTCGACGGTTGCGAAGCGAAAAGGGACCAGAAGGCTATGCCGGAACACATCAGCGCCAATATCCACAGCAGCGAGGCAGTGGCATCGAAGAATCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 2468146-2462625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031447.1 Austwickia chelonae strain LK16-18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2468145 28 100.0 33 ............................ CTCTATGCCCGTCGCGGATGAGCGTCAGGGTGG 2468084 28 100.0 33 ............................ CCGGCGCAGCACAGACCCATCCGACCACGTCGA 2468023 28 100.0 33 ............................ GGCGCGCAGCCATAGCCCTTCTGAGCTGGTCGA 2467962 28 100.0 33 ............................ CGAACAGAACAGTGGACAGCCGTTTCCCCCCGT 2467901 28 100.0 33 ............................ TTCGATCTCGGCCGGACCGAGCGTCCCGTAAAC 2467840 28 100.0 34 ............................ TCAGGGCTGTCGGTGCTGGCGGGGCACCAGGGGA 2467778 28 100.0 33 ............................ GCAGTCGTCGCTGGCGGCGGGGACGGCGTCAGG 2467717 28 100.0 34 ............................ CTCCGCCCAGTCCCTCCACAAGGGGTCAAAGGTC 2467655 28 100.0 33 ............................ CTGTCCAGCGTTCCACCGGTCGCTCTCGACGTC 2467594 28 100.0 33 ............................ GGGGGGTGACCTGCACCCATTTCCTACTCGGCT 2467533 28 100.0 34 ............................ TCCGTCCCCGGCGACCGCAAAGAAACATGGACCA 2467471 28 100.0 33 ............................ GAAGCTCCTCGCGTCGTATGAGGTTCTGGATGA 2467410 28 100.0 33 ............................ CGTCCCATCCGCCGGCACCGCAGAAGAGGTCGA 2467349 28 100.0 33 ............................ GCGTGACAGCAGTGAGCGACATCGGCCCTGACG 2467288 28 100.0 33 ............................ GCCCGGCGACGACCCGTGGGAAGCTTGTTCCAA 2467227 28 100.0 33 ............................ CATCGCCGCCTGGAAACGGCGCTGGGGTAAATC 2467166 28 100.0 33 ............................ CACCTCACCCCCATCAGCCAAGGCGGCACCAAC 2467105 28 100.0 33 ............................ CCGGGTCACTAGCTGGCGGCCGGACTCCAGCGC 2467044 28 100.0 33 ............................ TCCCCGTACCACACCACCACAAAACAATCACCC 2466983 28 100.0 33 ............................ GTCGCTGATTTTCACAACGCATGGTCACGAAGA 2466922 28 100.0 33 ............................ CCTGTGGGGCTACGACCCCAATGCCAGTAATGG 2466861 28 100.0 33 ............................ TGGTGACCGATACCGCACCGGCCGCGTCATGAT 2466800 28 100.0 33 ............................ GTAGTAGCAGGAGCAGGTGTCACCGCGCGCGAG 2466739 28 100.0 33 ............................ CGGCACCATTTCCGGGGGGACGCGCGTGACCTG 2466678 28 100.0 33 ............................ GCACCCCCAGGAGGCGAAGGACGCCTCTGGCCT 2466617 28 100.0 33 ............................ CACCTCCAAATGTTAGAACAAGTCCAGACCCGT 2466556 28 100.0 33 ............................ GTCCGAGCTAGAGCAGAGCGCGTTGCGGTCAAG 2466495 28 100.0 33 ............................ CTCACCATCCGACAGCCGGGCGAGGATCGAGTC 2466434 28 100.0 33 ............................ GACGGTGGTTCTAGAGAACCTCCTTCAGAGTGA 2466373 28 100.0 33 ............................ GCCTACGAAATAGGGGCGGCTGCCTGGGCCGCC 2466312 28 100.0 33 ............................ CGGCGACCGGTACCGGACCGGGCGTGTCATGAT 2466251 28 100.0 33 ............................ TCGGCCGGCCCAGCCCGCGTCCCCAGCTGCGCC 2466190 28 100.0 33 ............................ TGCTGGCCAGCGCAGGGGCCGGCAGCTCCTCGG 2466129 28 100.0 33 ............................ CTACACGATCCACCGTGGCGTATGAGGTTTTGT 2466068 28 100.0 33 ............................ CTACGACTCCAGCGGGGACGCGGCGCGGCGAGG 2466007 28 100.0 33 ............................ GAGACTCCGATACAAAGCCCAGACGGGATGAGT 2465946 28 100.0 33 ............................ ATCTCCGCCGTCATGCACGTCCCCGACTGGGCG 2465885 28 100.0 33 ............................ GCAATGCTCGACCAGCTGGCCATCCTGTCCTCG 2465824 28 100.0 33 ............................ CCCATGCCGGGTCTACCTGGTAGGTGTCGTTTC 2465763 28 100.0 33 ............................ TATCGCGGCCAGGTTGTGACTGTGGGGCCAGTC 2465702 28 100.0 33 ............................ GTCGAGGCCGTACTTGGATACTGCGGCTGCCTG 2465641 28 100.0 33 ............................ CGGCTGGCCCGGCGTCACCGAAGCCCCCATGCT 2465580 28 100.0 33 ............................ CGACGACGGACAACGCCGCTGTCGTCGCGCGTG 2465519 28 100.0 33 ............................ CGAACAGAACAGTGGACAGCCGTTTCCCCCCGT 2465458 28 100.0 33 ............................ CTCGGACGCGACATACGCCGAGCTGCTGCGCGC 2465397 28 100.0 33 ............................ CAAGCGCTCCGCCGGCCCATAGGACGAGCACAG 2465336 28 100.0 33 ............................ GGGCATCCTCCAGGCGATAGAGGACGGCGGGTT 2465275 28 100.0 33 ............................ CGCTCCGCTGCCCGCCCTCCCGCTCCAACGGCC 2465214 28 100.0 33 ............................ CCTGCTCAACGGGCTGGAGAGCAAGCGCCCCAG 2465153 28 100.0 33 ............................ CCAGCGCGTCACCGACCCGGCCGGCAGGCACCG 2465092 28 100.0 33 ............................ CGCGATCCCGCTCTGCCGCGACTGCCACATCTG 2465031 28 100.0 33 ............................ CACCTGACGGAGAAGAGACGGAACTGTGACAAT 2464970 28 100.0 33 ............................ AGCGGAAATCACTACGGAGGTGTCATAGTAATG 2464909 28 100.0 33 ............................ GCCGTACATTTTCAGGCTGGTCAGGACACCGGC 2464848 28 100.0 33 ............................ CTCACCCCGCAGCATGGGCGCACCGACGCCCAA 2464787 28 100.0 33 ............................ AATGAACGTCGAAACCGCTGCCGCGCATAACGC 2464726 28 100.0 33 ............................ CAACCATTCCGTCAGGCCGTCTGTCGTGCCGAA 2464665 28 100.0 33 ............................ GGCACGCAGCCACAGGCCCTCAGAGCTCGTCGC 2464604 28 100.0 33 ............................ TCGTCAAAATTCATCCCGCAGGGCCGTCCTGTG 2464543 28 100.0 33 ............................ CACGAGGTGCAAACGAATAACCAGGACCGGGTG 2464482 28 100.0 33 ............................ GTCTGCGACTGCTAGGCAGCGGGCGCAGTCCTC 2464421 28 100.0 33 ............................ GGCCGATGGAACGACGTCTACATGCAGGGCATC 2464360 28 100.0 33 ............................ GCTTTCGCTCTCGCTCACGGAAAGCTCTCAGAG 2464299 28 100.0 33 ............................ GACGACCATCCCTGCGACGCCCCGCTCCGGCTA 2464238 28 100.0 33 ............................ GGCCAGGACAAGCGCGCCGAGTGACCCGGCTGC 2464177 28 100.0 33 ............................ CGACACTGGCGCTGCCCGCACTATCTCCACGAT 2464116 28 100.0 33 ............................ GACTAAACGTGTGTGACGTGGCACACAGAAGCC 2464055 28 100.0 33 ............................ GGGGGCCAAGGTCATCGCGACAGGACGCCTCGA 2463994 28 100.0 33 ............................ GATCCGTCGTCCCACCGGCCGGTGGAGCCGCCG 2463933 28 100.0 33 ............................ CCTGGCCGCGGTACTTGTTCATCGCACTACCTC 2463872 28 100.0 33 ............................ GGAGGAAAGGGTCACTCCGCCGCTGTCGGGGAG 2463811 28 100.0 33 ............................ CTTGCGAGTCTGCTCCTTCACCTTCTCCTTGAG 2463750 28 100.0 33 ............................ GGGCCTCCGCATCAGCGCTGGGCGTGCGGCGGG 2463689 28 100.0 33 ............................ GCGGAGGCGCCGGTGGAGAAGAAGGATTAGAAA 2463628 28 100.0 33 ............................ GACCCCCTGACGGCTCGCTCCCTCTTCTCCTCG 2463567 28 100.0 33 ............................ CGGTGAGGCGCTGGGCGGCCGAGCCCTCCAGGA 2463506 28 100.0 33 ............................ TTCAGACTTTGCTTTTTTCATGACGTCGCCGCC 2463445 28 100.0 33 ............................ CCCCTCCCTGGCAGATCTACACCACCACCAACT 2463384 28 100.0 33 ............................ CGGCGAGCACCACTCCGGCCGGGCCATCGATTT 2463323 28 100.0 33 ............................ CGCCATACGCGCGGATCTCTCCGAGCGGCGATA 2463262 28 100.0 33 ............................ CCCATGGGCAGCCTGCAGAGCAGCTCCTCATCG 2463201 28 100.0 33 ............................ GACCACCGCGCAGACCCTCGCCGCGACGCTGAC 2463140 28 100.0 33 ............................ GCCGAGTGGGGCATGCGCTGGGAAGTCTTCCGC 2463079 28 100.0 33 ............................ CGCTGACCGAAATATTGACCGGTGGGTATCCAA 2463018 28 100.0 33 ............................ CAGCCATTCCGTCAGGCCGTCTGTGGTGCCGAA 2462957 28 96.4 33 ..........T................. ATCGACGCCGCCGGGGAGGTCGACGAATGCCCG 2462896 28 100.0 33 ............................ CGGCGAGCACCACTCCGGCCGGGCCATCGATTT 2462835 28 100.0 33 ............................ TAGTTGATCTGGGCTGTCCCGCTTTGGTAGACG 2462774 28 100.0 33 ............................ GCGTACCGTCGTGCGGATGTGGCCGCCCTTTGG 2462713 28 100.0 33 ............................ CAGCCATTCTTTCGGTCCGAATTGTTGCCGATG 2462652 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 91 28 100.0 33 GTGAGCCCCGCACCTGCGGGGATGAGCC # Left flank : CGAGTTGTGGGATGGGGGTGCGCGGACTGTTCCTGGTGGGGTCTCTTATGACGATGGGTGAGGTGGGTGATGGTTGTCATCGTGTTGACGGCGTGCCCGGCAGGGCTGCGAGGCTATTTGACCCGTTGGCTTCTGGAGATCAGCGCGGGGGTTTTCGTGGGCAAGGTGAATGCTCGCGTGAGGGAGGAGCTTTGGGATCGGGTTTTGGAGATGGTTCAGGATGGACGGGCCATCATGGTGTTCGGTGTGAACACAGAGCAAGGTCTGGATTTTCGGGTGCACCGACATGATTGGGAACCTGTTGATCTCGACGGGGTGCGTGTGATGCTACGTCCGGTGTCGGCTTCTGAGTCTGCGTCTCGCTCAGGGCTACGACCGGGCTGGAGCAAGGCCTCAAGAGGGAGGCGGTCATCGAGAGGTAGGAGTGGCGCGTGATGAGGGCACGTTGGAAGTTAAATGTAAATGTTGTTACTGGCTGGTAGACTTCCTGTTCAGGAAGT # Right flank : CATCGAGAGCAGGACGCGGGAGATCCTCGACTAGTTGTTGCGGGGTAGGAGGTTGTTGACGGTGGTAGTGGGCGGGTAGATGGGTAGATGAACGGGCAGGTCCTTGCGGCGACAGGATGGAGGTGTCGAAGCCATCCATCACGTCGAGTCAGCCGAAAGAACCTGCCCTATGACGCACCGTAACGCCCCGCTGAACCTCGAGGGCCGTCGCCGCCTCATCGTCCGCTGCCAGGACCGCCCTATCAGCCATGTCGCCGCCGAGATGGGGATCTCCCGGGCGTGCGCCTCGAAGTGGGTGAACCGGTGGCGCCGCTACGGCGAGGCCGGCCTGCACGATCGCCCCAGCACCCCACACACGTCCCCGACAGCGACCCCGCCGCGGGTGGTCGCCACGATCGAGACGTGGCGCCGGGAGAGGAAGTGGACCGCGGCGCGGATCACGTTCGAGCTGGCCGAACGCGGCGTGCGGATCAACCGGCGGACCGTGACCCGCCACCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //