Array 1 1100463-1101650 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018756.1 Metakosakonia sp. MRY16-398 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1100463 29 100.0 32 ............................. CCGCCGCAGTGGCCGCTGTTTTTTTGGTTGCC 1100524 29 100.0 32 ............................. ATGTCGAATGCTGGCACCTGATTAGTGCGATA 1100585 29 100.0 32 ............................. TAGATTGCCGTCTGCCTAATGCTCTTACCAGA 1100646 29 100.0 32 ............................. ATAATCAGGTCTGTGCGGTCGAATCCGCCATA 1100707 29 100.0 32 ............................. GGTGTGCCGCGCCGGGTTGGTAGTCCTTCCAT 1100768 29 100.0 32 ............................. CGCGTTACTGGCGTCAGGTAGGTAATCGTAGC 1100829 29 100.0 32 ............................. CGTCGCCAAAACGCGCCTGCACAAAATCAGCC 1100890 29 100.0 32 ............................. CCACTTCCTCGACGGTAGGGTAAAAAATATCG 1100951 29 100.0 32 ............................. AGTGCATATTACTACATAAAGTAGAAAATACA 1101012 29 100.0 32 ............................. CGCGGGACTGGAAACAGATTGCGCTGGAGCAT 1101073 29 100.0 32 ............................. CCCAAAAATCATTTCCAACCCCGGCCACTCGA 1101134 29 100.0 32 ............................. GTGTTACAAATATTTTTCGGCCAGCGCCACGA 1101195 29 100.0 32 ............................. GCAATTTTGGTCGCCCCAGGTGATGAAGTGAG 1101256 29 100.0 32 ............................. TTGAGTTTTCGGAGGGTTGATTTTGCGAATCT 1101317 29 100.0 32 ............................. GTTACTCCGGAAATAAACAAGGGGCCGAAGCC 1101378 29 100.0 32 ............................. CTCCACGCCACCCATAAGCTAGCTGGTCAAGG 1101439 29 100.0 32 ............................. TACGCAAAAACGAGATGTTAGGCATCCCGATG 1101500 29 100.0 32 ............................. AATGCATGGAAGATGAATTCATGAAATACGAA 1101561 29 100.0 32 ............................. TTCTGCGGGTTGGTACCAAGTACGCGCATCAT 1101622 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 33 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GACATCCTCCAGCAGGCGCTGGAACGCGCCGATGAGATCAAACACCCGGTTGGACGTACCCGAGACATTGAGGCGCTTGATGAGCTTCTGACGCAACTGACCGATGACAAACACCGGGTCATTGCACTGCAGCCTATCAGCCAAAAAGACGACGCCACCCGCTTGTGCATTGAAACCTGTATCGCCCGCAACTGGCGGCTGTCGATGCAAACGCATAAGTATCTGAATATTGCCTGATTTGGTTTCTGCCGGTGTTATTGCACCGACAAGACAGGTATTACCTGAGCGCCCGGCCTTATGGCCGGGCGTTTTCGTTTACCTGTCCGGCGGGCAGGGTAAAGGTTTGTGAAACAACGCTGTTCGGTAAAATCAGCTTTTGCCTGCGGTGTGTTTTTATTTTTATTAATAATCAATGGGTTAATGATTCAGCTTGCGTCGATATAATCGGTAGAATTTGAGCTGTGATAAATGATTCTATAATTCAATGGGTTATATTTAGA # Right flank : GAGCCATAAAATCAGCGCACTCAGGTGCGCTGACGACACAGAAGTGAAATTACTCGCCGCGGTAGATACACCCTGCGGTGCAGGTCTCTTTGATCATCACGGCGCTCAGCAGCGGAACGACGGGTTTCAACTGATCCCAAATCCATTTTGCCAGTACTTCGCTGGTCGGGTTCTCAAGGCCCGGAATATCGTTAAGATAGTAGTGATCCAGACGATCATAGGTCGGTTTGAACGCCGCCTTAAGCTCAGCAAAATCCATGATCCAGCCCGTATGCGGATCCACCTCGCCGGTGATCTCCAGACGCACCATAAATGAGTGACCATGAAGACGACCGCATTTATGCCCGGCTGGAACATGTGGCAAACGGTGAGCGGCTTCAAACATGAAATCTTTAAATAACGTGGTGGACATTCTGAACTCTCTGACTGGCTAGAAAAACCGCGGCATGGTAGCCGAAATGACCTTTTTTATCATTAACTAAAATCGGCAAAAGTGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1106913-1107307 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018756.1 Metakosakonia sp. MRY16-398 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1106913 29 96.6 32 .............C............... TCTACCGGGCGACCAATAGCCAATTCAATTCC 1106974 29 96.6 32 .............C............... AAGACCGACATCACCGGCGTCGCGTGATACAT 1107035 29 96.6 32 .............C............... GCAGCACTGGGGCGCGCGCCGTTCGGGCAGGA 1107096 29 100.0 32 ............................. GTGACGTCATTCACGCGCCCCAAACTCACCCG 1107157 29 100.0 32 ............................. AGGAGTTCGTTCAGGTCGATGCGCTGCTCCAC 1107218 29 100.0 32 ............................. AACGCTGGCAAGCACGGCGCGGATGTGACGAG 1107279 29 86.2 0 .............A...........CT.T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CGGACATGGTTTGCGGGCCTGCGTCGTGAGCAGTCCAGTAGCCGTGCCAACCTGCCTGTGCTGGATATTCAGCGCGGTGTTTTCAAAGTGCTGCCGATCATCGACTGGGATAACCGTACGGTGTATCAGTATCTGCAAAAACACGGCCTGAAATATCACCCGCTGTGGGATGAAGGCTATCTGTCTGTGGGCGATACGCACACCACCCGTAAATGGGAACCGGGCATGGCAGAAGAGGACACCCGCTTCTTCGGCCTGAAACGCGAGTGCGGTCTGCACGAAGGCTGATTTTTGGCTTTTCAATAAATAGATAAGATAAGCGCCCGGCTAACCACCGGGCGTTTTTTATGGGTTATACGTTGGTGAAATGAGAGTTTGTACATGGTGTGGTTTTCTTTAATAAGTAAAATCAAACAATTACCGATCTTAAAAAAGACGGAAATGTTGGTAGAATTTTGGGAGTGGTAATTGCTGTTTAAATTTAATGAGTTACGTTTAGA # Right flank : TTTATGCCTGATAAAAATAGCTCGTTATCATTAATATTTTCTTTATGGACAGCTATTATCCGACGGCTTCATTGCATCTCTATAAACTAAGAAAGCTATAATAGATACTGAACTTATAAGAGATATTACCTGTTAAATCATTTTCATAGTAACAAATACAAAATTTATATATGTAACCTTCTGGTGATTTAAATCACAAAATATACTTTATAAAAAGCGCAGTATGTATCGATAACAGTCGGATAAGGGACATCGCTTGACAATATTTAATTATTGGGGGAAGACCAGTCGAGGAAATAAACATGGTGGAGATGAATACCACCTGCTGTGCTGGCACTCATTGGATGTTGCTGCTGTTGGTTACTGGATGGTGCAATGCAATATCTATGGCGCTGCTGGTTATCTTAAAAAAGTAGGTCTCCATGATAAGAACAAGGCCGCGCAGTTTTTTGCCTGGTTATTATGCTGGCATGATATCGGAAAATTCGCCCACTCTTTTC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1115158-1115551 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018756.1 Metakosakonia sp. MRY16-398 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1115158 29 96.6 32 ....................T........ GTTGAATAACCCGCGCACATCGTCCTGCAGAA 1115219 29 96.6 32 ............T................ TGGTAAAAAAGGTGGCGACCAGTGTCCGATAA 1115280 29 100.0 32 ............................. AGCCGTAACCGCTTTTTCAAAATCATTGAGTT 1115341 29 93.1 32 ..........T..G............... TCATATCTGGCGTTATAACTCCCACCGACCGC 1115402 29 100.0 32 ............................. GCTGATTTCCTCGTCTCTTCCGAGGTGTCACA 1115463 29 100.0 32 ............................. TTCACTCCCCCGCGTCTAAAGTGCTGCCAGCG 1115524 28 86.2 0 .....................-.TCC... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGATCCAGTTTAGCAGCGTGGATTATTCCGGCGTGCTGGTGGTTAACGAACCCATGTTATTCCTGCGACGCTTGATTCAGGGATACGGTAAAAGCCGGGCTTTCGGCTGTGGTTTGATGTTGATTAAACCTGGAGACGGCGAGTGATATTTGTGCCGCTAAGTCCGATACCTCTTAAAGATCGCACGTCGATGATTTTTCTCCAGTACGGGCAGGTTGACGTGCTGGATGGCGCATTTGTGTTGATCGATAAGACGGGGATCCGCACCCATATTCCGGTGGGATCGGTGGCCTGTATCATGCTGGAGCTGGGTACTCGGGTTTCTCATGCGGCGGTGCGCCTGGCTTCGACGGTCGGTACGCTACTGGTATGGGTTGGGGAAGCGGGAGTGCGGGTTTACGCTTCCGGACAGCCCGGCGGGGCGCGAGCGGATAAGCTGCTTTATCAGGCGAAGCTGGCGCTGGATGATGACTTGCGCCTGAAAGTGGTGCGAAAAA # Right flank : GCGCCAGCGGGGTTCCCCCGCCCCAAACCCCATCTCCATGTCCGATTCCGGACATATTCCCACGCACGGATTCTGCTATCGTATTGGCGCCATTTGGGATGGCGTTAATTTAATCACTCAGGGATATGACAATGAAAAATATCGCGCTGGCGGCGCTGCTGATGGGGATGTGCACTGCGTCTTATGCGGAAACCGAAACCTGCAAACAATACTTCGCTGAAATGGACAGCTTCATTAAAGAAGCGTCAAAACATGAAGAAGCGAAAGCGCAGGTGGACATGCTGAAGACCCAGCTCGCGGAAGGCAGAAAACAGCTTGAGACTTACAGCGTAGAGCAACAGGATGCAGGCTGTAAGCAGGGACTGGCGGCAGTAAAACAACTCAATGCCTCACTGGGCATCAAATAACAAAAAGGGAGCCGATGCTCCCTTTTTTCGTTTTTACGAACGGCAGATTTACTTTGTCCCCGCCTTTGCCAGTTCTTTGACCAACGGCAGCAT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //