Array 1 962955-963695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050129.1 Listeria monocytogenes strain MB2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 962955 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 963020 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 963085 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 963149 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 963215 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 963279 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 963342 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 963406 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 963471 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 963535 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 963601 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [963624] 963667 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1114779-1112761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050129.1 Listeria monocytogenes strain MB2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1114778 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 1114712 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 1114646 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 1114580 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 1114514 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 1114447 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 1114381 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 1114315 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 1114249 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 1114183 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 1114117 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 1114051 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 1113985 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 1113919 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 1113853 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 1113787 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 1113721 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 1113655 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 1113589 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 1113523 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 1113457 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 1113390 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 1113324 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 1113258 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 1113192 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 1113126 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 1113060 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 1112994 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 1112928 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 1112862 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 1112796 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //