Array 1 12281-12852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH164926.1 Neisseria shayeganii 871 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 12281 33 100.0 34 ................................. TACCCGAAACTGATCGGCACCATGACGCTGCGCC 12348 33 100.0 34 ................................. CAGCCGCACAGCCTGGAAGAATACCTGCTTAATC 12415 33 100.0 34 ................................. TACCCGTTCGGTTTGCAAGAATCGGTGGATGCGG 12482 33 100.0 34 ................................. AGCTGCTCGGCAGTTGGAAATTGCGTAGCAATTT 12549 33 100.0 34 ................................. CAACGGCAACGATACCGCCCCCGGTAACGGCGAT 12616 33 100.0 37 ................................. TGTACTCTATAACTCACATGATAACCATCAATCATAA 12686 33 100.0 33 ................................. AGTAAAGGCCAACTGGGCAACCGCCGCATGTGG 12752 33 100.0 35 ................................. CATGCCGGTAATGTCCGGGTAGAGCTGGCGCAGCA 12820 33 90.9 0 ..........A.C............T....... | ========== ====== ====== ====== ================================= ===================================== ================== 9 33 99.0 34 GTGCCCGCCTCGTGCGGGCACGTGTGTTGAAAC # Left flank : AGCCTGCGGGAGCGAATGATGCTGATGTTGATTACGTACGACATTTCGCTGGAAGACGCGGCGGGACAGGCGAGGCTGCGGCGCATTGCCAAACATTGCTTGGATTACGGCGTGCGCGTTCAATATTCGGTATTCGAGTGCGACGTAACGCCGGATCAGTGGGTAAAACTTAAAAACAAGCTACTCGACACTTATCAGCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGGGCAAGGTGGAGCATCATGGCGCGAAGGCGGCGGTGGATGTGTTTGGTGATACGTTGATTGTGTGAGCGCTGACCTGTGGTTCTCATGAAATTGTGGGGAGGTTGGCGATTTTGTGATGTTCTTTAACAACAAAGAATTAAAGGGTGCGAGTGTGATTGAAAGGGCTGTGCTACACTCGCGTTGCGCTTTTTGTGAAGCCGTTAGCGAATCGGGGTGTTCCAAACCTTGAAGGAAGCGGGGTACACAGAAAGCC # Right flank : CCGTGAAATTCCGGAAGAGCAGAAAAAGGTGCCGCGTGCCCGCCTAGCGCGGGCACGCGTGTTGAAACAAAACAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCCGCCTCGTGCGGGCACGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 883013-882251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH164926.1 Neisseria shayeganii 871 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 883012 32 100.0 34 ................................ AACGAATGGCATAAGCGGACCATTCGTGAAAATC 882946 32 100.0 34 ................................ TGCTATGGCATCTTCGGCACTGATATTTTGCAGG 882880 32 100.0 34 ................................ ATGCCGTTAATAGCGGTAACGGCTGCTTCATGCG 882814 32 100.0 34 ................................ ATAAAACCTACAACCGCCAGGCGCTGACAAATCA 882748 32 100.0 36 ................................ CCGGAGTCTGTCTATTTACATAGTGGTTACATCAAA 882680 32 100.0 34 ................................ ATTCAATCCTCCACATAACGGTAAAACTCAAACA 882614 32 100.0 34 ................................ GATATTGCCTGCCAGCGCATCGAAAATGCCTTGG 882548 32 100.0 34 ................................ GCCAGTTGGAGCAATTGGACGCGCAGAGCCGCTC 882482 32 100.0 34 ................................ ATGGCCCTCCTCATCTTGTCGGTCGATACCGGCC 882416 32 100.0 36 ................................ TCATCATTGCGCCCCTCAATAACGAAACAGTATCAA 882348 32 100.0 34 ................................ CCCGATACATCCAGCCCTGTTCGGTATAAACGGG 882282 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 100.0 34 TCAGCCGCCCACGGGCGGCTGTGTGTTGAAAC # Left flank : CCGGCGGCCGCATTGCCTTCGGTTTCAACGCCGCAGAAAGCGCCTACGGCTTGGTGCCGCAAGTGTTCCACTGGCAGCTTTCGCCCACCGATTATGTGGACACCGTGGTGCAAAACTTTCTCGACCTGATGGCCGAGTGCCGGGTGGAACACATCCGCCTCCTGCACGACACGCTACCTGAAGGCACCGCCTTGCCCGATTACGGCCAGGCTTTGGCGCTGCCGGGATACAACCCGCTGTTCGCACAGGCGCATTGATTGTTGCCGGCTTTCAGGTAGCCTGCGGCAGAGTGGCGGGGACGGCGGCAGCCGATAGCCGGCCAATCGCTAAAGTGTGGTGCTCATGATTTTCCCGGCAGGTTGGCGAAGATTGATTTCTTTAACTATTCAGATAATTGGATAGAAAGCGGATGGTGCTATCATCCGCTTTGTGCCCATTAGGAGGTTTTTAGCGAAAACAGGCGGTTTTTGCCTGGATTGGCAAGGCTTTCCGACAGGGCT # Right flank : CAAGGCGGCGTGCAGCTTGTCGGCCTGTTGCAGGTCAGTCGCCCACGGGCGGCTGGAACAACAGTATCGCTATGTTTTTCATGGTAGACCCCGTTAGCTACTGTTGGCTTGAATAGTAGAATTGCCACAAAAAACACCGCCTGGGCGGTGTTTTTATTTTCTGAACGGCAGGCAGCCGATCAGTACATTTTCGGGGGGAGTTGTTGGCTGCGCAGGCGTTTTTGCAGGCGTTTGACGGCGGCTGCTTTTTTGCGTTTACGCTCGGTGGTCGGTTTTTCGTAGGCTTCGCGGGCGCGCAGTTCGGTCAGCAGACCGGTTTTTTCGATGGCGCGTTTGAAACGGCGCATGGCAACTTCAAAAGGTTCGTTTTCTTTTACACGGATAGAAGGCATTTTGTTTTCCTTAAATAAAATGGGTTGACAGGCCGGCGCGGTTGGGTACGGGCGGCGGCCGAAAATATTGGATGGGTAGGTACGGGTGGGCGGTTTGCCCGGCGGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCCACGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1539031-1537340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH164926.1 Neisseria shayeganii 871 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1539030 32 100.0 33 ................................ CACATTAACTTGGGGACTAAGGTATTTGCTTCC 1538965 32 100.0 35 ................................ AAACTTGGATGTAACATCATCATATGTTCCAGGCG 1538898 32 100.0 34 ................................ CATCTATGTGTATTGATGGACGTATGGTTGTAGC 1538832 32 100.0 35 ................................ TACCGTTTCAGGTAGCCCGACCAAGGCCAGCGGAT 1538765 32 100.0 34 ................................ GTGTTCCGGCAACTCGATGCCGGCCAAATGGTAG 1538699 32 100.0 34 ................................ CATGCGCCTGCTGCTGCCGGACGGCGCAGCGTAT 1538633 32 100.0 33 ................................ GATTGGCCGACATAAAGCTGTCGGCAAACGCAT 1538568 32 100.0 34 ................................ TTCATGGTGGACACGCATCCAACAATGGTTCCAT 1538502 32 100.0 34 ................................ ACCCGTAGGAATGCTAGGGTAACAACCAAGTAGG 1538436 32 100.0 36 ................................ TACACCATCCAAACAAGCGCGAAGGTCATAGCAAAA 1538368 32 100.0 34 ................................ AAGAAATTTTGGAGAAAGTCGGCTGCACCTGTGG 1538302 32 100.0 35 ................................ ACTTTCTGCGTTTCAAAATCCATATCCGCCACGAC 1538235 32 100.0 35 ................................ AGCGGGGGAGCAAATCGACTGGGCCAATATTCAAA 1538168 32 100.0 35 ................................ CATAAACTGCCTTTCGGATGGTTTCCACCACCAAA 1538101 32 100.0 34 ................................ CCACCCGATATTATTTCTTTCTTAAATAACGAAA 1538035 32 100.0 33 ................................ GACTGGTGGGAAAAGGTTATAAGAGACAATCAA 1537970 32 100.0 34 ................................ GGTAGCAGGTATTCCAGCGCGTGATGCCGAAGGC 1537904 32 100.0 34 ................................ TTCGGCACGATGGCCGCCATGTACGTTTTTACCT 1537838 32 100.0 33 ................................ GGGAGCTTTAGCAGGCGTTACAGCCTGACGTTC 1537773 32 100.0 36 ................................ GTCGTAGGTGTAGCCTTGCTCAATCAGGCTATCGAG 1537705 32 100.0 35 ................................ TGAAAGATGGTCTAGCGCTGCTCTCAAGGTTTCAA 1537638 32 100.0 34 ................................ CGCCGATATGGCCGAAATCATGGGCTACGGTTTG 1537572 32 100.0 35 ................................ AGAAATAAACATTTCACACCCCTAACATTGTTAAA 1537505 31 96.9 37 ....................-........... AGGTAATAGTCCATTACTCGCCCTCCACCGGTTCCAG 1537437 32 100.0 34 ................................ AATGAGGGTATGCGCTGCCAAGGGCTGCGTCTGT 1537371 32 93.8 0 ...........................T...A | ========== ====== ====== ====== ================================ ===================================== ================== 26 32 99.6 34 TCAGCCGCCCACGGGCGGCTGCGTGTTGAAAC # Left flank : CGACAGCTACACCCGCTACCTCACCCAAACCTTCCGCAAAGCCTTCAATCTGCAAGGCACACCCTTGCGCATTCAATACAATGTATCGGACAACCCGTATGAGGAGAGCGCGGACAAGGTGAAAAACAAACCCCTGCGCCGCGTGTCCCTCAGCAACCGCATCGCCAAACGGGAAAACCAAAAAGCCGAAAAAGACCGCATCCGCAAGCCGAAAAAACGCCAAGTGAGCGTGAAAAAGCAGCAGGCGAAGTAAACGGCCGGGTCGGGCTACCTGAAAGCGGTGTCGGCGTTGTTCAGGTAGCCTGCAGCATTCGATTAGCCAATCGCCAAACTGTGGTGCTCATGATTTTCCCGGTAGGTTGGCGAAGGTTGATATCTTTAATAATTCAGTAGATTGGATAGAAAGCGGATGATGCTATCATCCGCTTTGTGCCCATTAGGAGGCTTTTAGCGAAAACAGGCGGTTTTGGCTTGGATTGGCAAGGCTTTCCGACAGGGCT # Right flank : AGATAGATGAGCAAAGTATTCATTGCGGGGTCTCTCTTAGCCGTCATAGGGAGGTTGGGAACAAAGTGTCAGTAGAAGGCGTCCATGAACAATAGGCCTATATGCATAGGTTGAGACCTTTGCAAAACCCCCATCTGCGGCGCATTTCTGCGTTGTGTGCTGCTCGCTCGCTTGCCTATCTATATGATATGTTTGTCCCACGGGGATTCCTGGCGTTCATGCTCGCTGCGCTGCTACGCCTTGAACTGTATCCACATCTGAGGAGTTTGCAAAGGTCTCAGGTTATCTATGATGTCGTCACCAAGCGCTGTGGCGGTATTGGGGGTGAAAATCCGCACCTACGGCGTTAAATATGCTCGCAAGATGTCCAATCTTACTGCGCTTTTTGCCTAGCAGTTGCAGCTGTTACCTCAAAAAACCGCTTCGCAAGCATTATTATGATGATAAGCCCTAATCAAGTGCTGCAATGAAACACTCCGCTTCAGGTAGCCTATGCTCAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCCACGGGCGGCTGCGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //