Array 1 605227-606353 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTPO01000002.1 Escherichia coli strain 10433wH5 NODE_2_length_757872_cov_42.8811, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 605227 29 100.0 32 ............................. CAAACGACACTGACGCCATTTTTTTAACCGCA 605288 29 100.0 32 ............................. GTGACGACAGAGGGATTCGGCAGCGAGGAAGA 605349 29 100.0 32 ............................. TATCGTTGCGTTGCAGGGCTGGGTTACGTTGC 605410 29 100.0 32 ............................. GAATACGACAACGGTTCTCACGTTCTCACCGC 605471 29 100.0 32 ............................. TCAGTGCGTACCGTAAAACAGGCGATTCTGGA 605532 29 100.0 32 ............................. GGTACATTGATCCTTGAGAGCCAGCACACCAG 605593 29 100.0 32 ............................. TGTTCCGGTCATATATTGTCAACATTGCGTTG 605654 29 100.0 32 ............................. GTCGCCGCGATAAAGTGCGGCGGCTGGCGACT 605715 29 100.0 32 ............................. CCTGCAGCTGGCATGATTCGCGCCGATGAGGA 605776 29 100.0 32 ............................. CAATTTTTTATTGTCGGGGGCGCAGCTATCGC 605837 29 100.0 32 ............................. AAATTCGTTGCGCTTCTGTCCGAAAGCTGCCG 605898 29 100.0 32 ............................. TTCCAGCAGCATCTGCTATTGATTGGATCTTA 605959 29 100.0 32 ............................. CGATCGGCAACAGCATGGCGGTGCCGGTAATG 606020 29 100.0 32 ............................. CCGACGTACAACTACGGAGGCGTGTCGATTCC 606081 29 96.6 32 ...........A................. CAATCCACGCCGAAGCGCTGGAAATGGAAAAA 606142 29 100.0 32 ............................. TAACGCGCCTGACTGGCGAACCGCTGGAACTG 606203 29 100.0 32 ............................. CGATCTTTTCCTACCTGGTACAATCAGTAAAT 606264 29 93.1 32 .T..........G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 606325 29 89.7 0 A...............T...........A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTGAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACATCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTGCTTAAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 631839-632295 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTPO01000002.1 Escherichia coli strain 10433wH5 NODE_2_length_757872_cov_42.8811, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 631839 29 100.0 32 ............................. CCCGCGCCGCAAGGATCTAAAAAGGATCTGCG 631900 29 100.0 33 ............................. CTAAGTAATCTACTTTTTTGAATTCTTTAAAAT 631962 29 100.0 32 ............................. ACGGCATGAAAATGCTCATGGGGCAGATCGCC 632023 29 100.0 32 ............................. AAACGCGCCTCAGCAAATCAGTTGCTGGTAAA 632084 29 100.0 32 ............................. TTTTTTCACTCATTCCCGAGCCATCGGGTTTA 632145 29 100.0 32 ............................. CACACCGGTGCGACGGGAAACGTTCAGCGGCC 632206 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 632267 28 75.9 0 ..A........C..T....A..-.C...C | T [632286] ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGGAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTCAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAACATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCTTTATCAATATGTTGCTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCGGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //