Array 1 7924-2868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOIG010000016.1 Clostridium perfringens strain 1805-103 NODE_16_length_47643_cov_130.139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7923 29 100.0 36 ............................. TAAATGTTAGAGAAACTCCTAACGGAGAGGTTATAG 7858 29 100.0 36 ............................. GGTTAGTTAATGCATAAGCTATTTCCGTAAACTTAT 7793 29 100.0 36 ............................. TATTTATATTTCTATTTTATCATACTTTATCCTACT 7728 29 100.0 36 ............................. TTTCTTTAAACTCAACTTCTGTAATAAGAGAATCTT 7663 29 100.0 37 ............................. TGGGGAGATGTAGGTTCAATTGATAAGCCTGTCGATA 7597 29 100.0 36 ............................. GTAATAATAACTTCTCTTTCAAAATTTAACATAATA 7532 29 100.0 36 ............................. GATGAAACTTGGTATTACAGAGCAAGAGCTGTTAAT 7467 29 100.0 35 ............................. ACGGAGAGTTTGATGTTTATAGTAGCTCAGAAAAG 7403 29 100.0 37 ............................. ATGATAATAAGTATAGTATTTATATTAGTAGTAGTAG 7337 29 100.0 36 ............................. AACAAAACATAAAAACATTACAACGCCTGTTATAGG 7272 29 100.0 36 ............................. TCTAAGATAGTATTAGTTAAATTTAAGAAAAGTGCA 7207 29 100.0 37 ............................. GTTAAATATACAGAAGGTGGGTATAGAATATATAAAA 7141 29 100.0 38 ............................. ACTAAAAAACTCAAAAACAAAAACAAAGGTTTAAACAT 7074 29 100.0 36 ............................. AGAGAGGGTTATTTTGTAGATACTTTTAATAATTTT 7009 29 100.0 36 ............................. ACTTTATTAGATTAGATGATTCAAATGGAGATTATC 6944 29 100.0 36 ............................. GCTTATATGATAATAATGTAAATAAGATTGATTCTC 6879 29 100.0 36 ............................. TCATATTTAGAATAGTTAATCGTGTCGTTTTTAATA 6814 29 100.0 36 ............................. CATTTATATAAACTAGAATGTGAAGATGATTCAGCG 6749 29 100.0 37 ............................. GTTGAAAGTACTTTAAGCATTACTTGTACCACTCTTC 6683 29 100.0 36 ............................. TAGAACCTTTACCGCCTAGCACTTCAACACCTTTCA 6618 29 100.0 36 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGTA 6553 29 100.0 37 ............................. TAATATTCCACTCCTTACTTAATAAACTCCGAGGACG 6487 29 100.0 36 ............................. GGAGAATTAGTCCAAGGAGTTTTTAATGCAGATATT 6422 29 100.0 35 ............................. AACTTTGTAGAATCGTAAAGCTTATCTTCAACTTG 6358 29 100.0 36 ............................. GTTATTATCATCATTATCCCCGAAAGCTTAGTTTTC 6293 29 100.0 36 ............................. TTTACAGTATCAGTTACAGTTACCCAACTGTCTTTG 6228 29 100.0 37 ............................. AGGGAAAACTGATGCAATAGGTAATTATAAATTTATA 6162 29 100.0 36 ............................. CTTAATGATAAACCTAAAAAGAAAAAAATACGCAAT 6097 29 100.0 36 ............................. AACTTTATTAAAATAATAGCTGCATATAATATCTTT 6032 29 100.0 36 ............................. GTGAAAACAGTAGGTAAAAATTTATTAGATCCATCA 5967 29 100.0 36 ............................. TGAGATTTTTTAAATCTATAGTGCTATTCGGAGTGT 5902 29 100.0 36 ............................. CTTTACTAATTTATTAATTGAGGTGTTTTAAATGAA 5837 29 100.0 36 ............................. ACTTTATTAGATTAGATGATTCAAATGGAGATTATC 5772 29 100.0 36 ............................. GCTTATATGATAATAATGTAAATAAGATTGATTCTC 5707 29 100.0 36 ............................. TCATATTTAGAATAGTTAATCGTGTCGTTTTTAATA 5642 29 100.0 37 ............................. TTTAATTCTGAATCTTTCTCCAGCTGGTATTTTTCCA 5576 29 100.0 36 ............................. TGTTTAACTATTTATTTTCAGTTGTTGGTACAAAAT 5511 29 100.0 37 ............................. AAAGAACTTGAAAAAGAGCTTGACGAATTTCATGAAG 5445 29 100.0 36 ............................. TTATGTTCTGAAATTATATTAGTAATTGGTAATTCA 5380 29 100.0 37 ............................. TTATGGTATGCATGGTATAACTCTAAACTTAATAGAG 5314 29 100.0 37 ............................. AAGTTTTCAGGATAAACATAGAAACATTGTGAAGTTG 5248 29 100.0 36 ............................. CCATAAACCCTTTGTTTTTTAAAATATCTCTTACAC 5183 29 100.0 36 ............................. CTTTACTAATTTATTAATTGAGGTGTTTTAAATGAA 5118 29 100.0 38 ............................. GTTGAATAATTGAACCATGTTTCTCTCTATCTTTATAG 5051 29 100.0 36 ............................. GTAGCTCCAGAAACTTTAGCTGAAAAAGCATTAACA 4986 29 100.0 38 ............................. GGAGTTAACTCATAATCTAAAGTATTATCTCCAGGAAT 4919 29 100.0 36 ............................. AAATCAACCATATTGGTTCCATACAGAATTTCAAGA 4854 29 100.0 36 ............................. ATATCAGAAAATAGATTAACAAGGGGACTTAACTGA 4789 29 100.0 36 ............................. CTCTATTTTTACGCTTATTAAATTCAACAATATTTC 4724 29 100.0 37 ............................. AAGTTTTAAACTCATCTATAAAAAAATTATCGCTAGG 4658 29 100.0 36 ............................. GCGTTTTTGCATGGGATGAAGTTCAAAACGAATTTA 4593 29 100.0 37 ............................. TAAACTTAAATAAATATAATCCATAGTAACCTTAGCA 4527 29 100.0 36 ............................. TAAATATTAAACTATTCTTACAGATGACTTACTACA 4462 29 100.0 36 ............................. GAGTATATCAAGCTGTAGAACACAAACATGCTACAT 4397 29 100.0 37 ............................. ATGGGTAAAAGTGTTGTAAGATTGCTAGTAACAGCAG 4331 29 100.0 36 ............................. GATGTTAATAAGCGTATTAAAATAAAACCACGTAAA 4266 29 100.0 36 ............................. GTTGAGAAAGTGCAAGGTGTTAATAGGAAGGTTAAA 4201 29 100.0 36 ............................. TGTCGTTTTCGGTGGATTAACTCTTTTATTTTTAGC 4136 29 100.0 36 ............................. GAAGTTACATGAGCATTATTTATAATTGTAGTCTCA 4071 29 100.0 37 ............................. CCCAAATGGAATATCAACAGGATTACCAATATTAATA 4005 29 100.0 36 ............................. TTATTACTTGTTTAACGAGGTGTACACCTTAATTTT 3940 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGGATAATTTACTTCATTA 3875 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 3810 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 3745 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 3680 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 3615 29 100.0 37 ............................. TTCAGGATGTTGAGATTTAAGAACACGACAATCAGGG 3549 29 100.0 36 ............................. TTATTCACACATCAATGACAGATGTTCTTTTATCCC 3484 29 100.0 36 ............................. TGTCCTAAATTAGATATTCAAATTGAAGAAGGAACA 3419 29 100.0 36 ............................. GTGTTCATTATTACGTTGATGATACTGGAGTATATC 3354 29 100.0 36 ............................. CAAAAACACCTTTTAAAATGACAGCTTACTGTGAAA 3289 29 100.0 35 ............................. CTATTAATGATATATCCGGATAGGCGGGGTTGAAT 3225 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 3160 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 3095 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 3029 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 2963 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 2897 29 86.2 0 .................GAA....C.... | C [2870] ========== ====== ====== ====== ============================= ====================================== ================== 78 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTTCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //