Array 1 3241723-3240474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050212.1 Escherichia coli strain RM-065-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3241722 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 3241661 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 3241600 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 3241539 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 3241478 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 3241417 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 3241356 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 3241295 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 3241234 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 3241173 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 3241112 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 3241051 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 3240990 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 3240929 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 3240868 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 3240807 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 3240746 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 3240685 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 3240624 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 3240563 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 3240502 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3271815-3270260 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050212.1 Escherichia coli strain RM-065-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3271814 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 3271753 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 3271692 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 3271631 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 3271570 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 3271509 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 3271448 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 3271387 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 3271326 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 3271265 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 3271204 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 3271143 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 3271082 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 3271021 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 3270960 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 3270898 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 3270837 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 3270776 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 3270715 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 3270654 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 3270593 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 3270532 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 3270471 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 3270410 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 3270349 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 3270288 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //