Array 1 36706-39630 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPV01000043.1 Bifidobacterium longum subsp. longum strain MCC10012 contig0043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 36706 36 100.0 28 .................................... CAGCACTGGACAAAGAGGTTTGTCATCG 36770 36 100.0 28 .................................... ATTCGGTTGATGTTGATGGGTTTGAGAA 36834 36 100.0 28 .................................... GTGATTACGTGCAGGTGGCTCATATGCT 36898 36 100.0 28 .................................... CCAGCTTGTTTTGGCTAGCCTCGATGCC 36962 36 100.0 28 .................................... GAGTCGATTTTGCTCATATCCGCAGTGT 37026 36 100.0 28 .................................... CTTGGACGACGAGACCGGCAAACTGATC 37090 36 100.0 28 .................................... GATGGACTGGTCAGCAGCGTCAGCATCG 37154 36 100.0 29 .................................... AATAAGGCTCGGGTTTCCTCGGGTGAAGA 37219 36 100.0 29 .................................... ATACCATACGTGTACAGCACGCGCGGTGT 37284 36 100.0 28 .................................... TCGATGCTGATTTTGTTGTGGCCGGTGC 37348 36 100.0 28 .................................... CTTTTTCTAGGCTCTGGCGTTACCGACG 37412 36 100.0 28 .................................... ATATGGCCTCGCACCACATAGCATGAAC 37476 36 100.0 28 .................................... CCTGCTCCGATCGGTTCAATAAATAGCT 37540 36 100.0 28 .................................... GCTACTGCCGCCTGTAGTTCGCCCTCGA 37604 36 100.0 28 .................................... TCCATTGACGCATTGTACTGGTCAAGTA 37668 36 100.0 28 .................................... TATTCGTTGCCGATGATGTTGCGGAGCT 37732 36 100.0 28 .................................... CGTGCCTATGCGTTGTTTGCCGCCTTCC 37796 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 37860 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 37924 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 37989 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 38054 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 38118 36 97.2 28 ......A............................. CCGAGGCCGGTAGGGTTGCGTGTCTGGT 38182 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 38246 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 38310 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 38374 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 38438 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 38502 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 38566 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 38630 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 38695 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 38759 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 38823 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 38888 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 38952 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 39016 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 39080 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 39145 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 39210 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 39274 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 39339 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 39403 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 39467 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 39531 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 39595 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 46 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //