Array 1 109515-107928 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXEE01000004.1 Pseudomonas aeruginosa strain AUS464 IPC432_4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109514 28 100.0 32 ............................ TGATGGACAGCATGGGGGCCGAGTTCAGCCTC 109454 28 100.0 32 ............................ AAGAATACCATCCATATATCACCTCATGCCGA 109394 28 100.0 32 ............................ TTGTTGGTTCCTGTGATCTCGTTGCCCTCGTC 109334 28 100.0 32 ............................ ATGGTCATTATGCGAAGCCATGGGTCAGAGCG 109274 28 100.0 32 ............................ ACTCGCAACCGCTCTTCAAGCTCGGCAATCTG 109214 28 100.0 32 ............................ GATCAAGGGCAAGCGCTTTCGCAAGCGGTTCA 109154 28 100.0 32 ............................ TGGAGCCCGCGAAAGTGGCTCGGTTGCGTAGC 109094 28 100.0 32 ............................ ATCGCCGCCACCGGTGTTACCGCCATCACCAC 109034 28 100.0 32 ............................ CGGCGAAGGCCGGCAGCGAAGTCGCGGCAGTG 108974 28 100.0 32 ............................ GCGAACTGATCGACAGCCTCGGCGTGCCGCAG 108914 28 100.0 32 ............................ ATCACCGCCATCGCCCCCCGGCTCAGTCGGAT 108854 28 100.0 32 ............................ TTGGTGACGTGTTCGGGTGGCCGTGATGGCTA 108794 28 100.0 32 ............................ AGCACGTCGGCGCCGCCGCGATCGACTGGTTC 108734 28 100.0 32 ............................ TGACCAAACACTCCAGCCAGCGCGCTCGCCAG 108674 28 100.0 32 ............................ TCACCACCGCCGGAACGCTACATCCTGCTGGA 108614 28 100.0 32 ............................ GCCGACTGATCCGGACGAACCTCCGTCCGATC 108554 28 100.0 30 ............................ ATGGGAATGCTCTCCTGGCACGAAGAAACA 108496 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 108436 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 108376 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 108315 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 108255 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 108195 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 108135 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 108075 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 108015 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 107955 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.2 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 892847-894134 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXEE01000001.1 Pseudomonas aeruginosa strain AUS464 IPC432_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 892847 28 100.0 32 ............................ AGATGACGAACTCGTCGAGGGCGCTCTTCATC 892907 28 100.0 32 ............................ CAGTCGCCGCTCTGCTGTTCTTCTGACAGGCC 892967 28 100.0 32 ............................ GTTACGCCTTGCGCAACATGCTATAGACCAGA 893027 28 100.0 32 ............................ AAGCTCCCCGATGGCCGTTGGTTCGTCGATGT 893087 28 100.0 32 ............................ AACGTCGATCAGATGAAGGGCGCGTTCGACCT 893147 28 100.0 32 ............................ AAGGAGCACCACGACATGGTCAGAGCAAACCC 893207 28 100.0 32 ............................ TCCTAGTTCTTCGCCAAGCCGGAAACCGAGGC 893267 28 100.0 32 ............................ GTAGGAACGCCATCCACTCGAGGTCATGGCGC 893327 28 100.0 32 ............................ ATCGCCGCCACCGTCGCCGCCATCACCATCCC 893387 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 893447 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 893507 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 893567 28 100.0 32 ............................ TAGAGGGCGACCTAGAGCTTGCGGCGCAACAC 893627 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 893687 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 893747 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 893807 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 893867 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 893927 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 893987 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCA 894047 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 894107 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 903832-902663 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXEE01000001.1 Pseudomonas aeruginosa strain AUS464 IPC432_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 903831 28 100.0 32 ............................ AACTGCTGGTGGTGAGGCCGGCGTAGGTGCGC 903771 28 100.0 32 ............................ GATCAGCAAGACGTCGCGCGTCGTGATCGTTT 903711 28 100.0 32 ............................ ACAGTGACACGAGCCTGGCTGACCGACTCAAC 903651 28 100.0 32 ............................ ACGTAGTTCATGCACGCATCAAAACTGATCAG 903591 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 903531 28 100.0 32 ............................ AGAGAGCGCGTAACGATGCGAGCAGAAAGAGA 903471 28 100.0 33 ............................ TGTACGCGGGCGTCCTGGCTGATCAGGCTCCAG 903410 28 100.0 32 ............................ TGCTCGACCTTCTGTTCCCAGGTGGCGATGGC 903350 28 100.0 32 ............................ AGGAAAAGCTCGCACGCTGCGCGGATGAAGAG 903290 28 100.0 32 ............................ TGGCTGTTCGTGCTGGTGTCGATGGCCGGCCT 903230 28 100.0 32 ............................ TCTGGCTGGGCTGGAGTGACAGCGGACTGGTC 903170 28 100.0 32 ............................ AGCGACGGGTGCATGGGCTTGTCGACCGCCCA 903110 28 100.0 32 ............................ TCGGTACCGCTGGCAACCTGCTGAGACGCATC 903050 28 100.0 32 ............................ TTAAGCCACGCGTCCAGATGGCGCAGGCAAGG 902990 28 100.0 32 ............................ TGATAAGTTCGACGGGCCGTTTACGCTGAGAG 902930 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 902870 28 100.0 32 ............................ TTACAGATCGGGTGCTCTTCCATGGTGAACCT 902810 28 100.0 32 ............................ AGGGAGGGACTGCGTTGCGGGCCTGCTATGAC 902750 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 902690 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCTACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //