Array 1 505025-505586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016157.1 Staphylococcus simulans strain MR2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 505025 36 100.0 29 .................................... AACACCAGAAAATATCACGAAAGTAACAA 505090 36 100.0 30 .................................... TTATGGCGTTTTGTGAAACAGTGCCGAATG 505156 36 100.0 29 .................................... ACATTATCGCAGTATGTTAGCTGACGAGC 505221 36 100.0 30 .................................... GTGAGTGTACACAAAGATGAAGATGACATT 505287 36 100.0 30 .................................... AATCATTCTAACGCCACACAGACACGCCCT 505353 36 100.0 30 .................................... AATCATTCTAACGCCACACAGACACGCCCT 505419 36 100.0 30 .................................... AAGTTCTTGCATTATGTTCAGAACATCATA 505485 36 100.0 30 .................................... AAGTTCTTGCATTATGTTCAGAACATCATA 505551 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGTGTATCTATTTTCTTAACCATAATTCAAGTTTATAATTGTGCTAGAG # Right flank : CACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGTATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATTTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACACAATTACTACACATTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1842404-1841779 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016157.1 Staphylococcus simulans strain MR2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1842403 36 100.0 29 .................................... TGTTTAATAAATAATAAAACGACGATTAA 1842338 36 100.0 30 .................................... GCAGCAAGACAAGCAATGACGAAACATCAG 1842272 36 100.0 29 .................................... CAATTAAATTATAAAAAAGGGCAGAAAAA 1842207 36 100.0 30 .................................... GTTGGAGGAAGTCGGAAAAATTGTTGGTGT 1842141 36 100.0 29 .................................... AAACGTTATCAACACATTCGTAGGGTTTT 1842076 36 100.0 30 .................................... AAAAGAAAACGGCAATGCTGGCGTTGTGGG 1842010 36 100.0 30 .................................... TGAGATGATTTGAGAACCATTTAAGCCTTT 1841944 36 100.0 29 .................................... TTTAATAACTATCGTTTAATAACTATCGT 1841879 36 100.0 29 .................................... TATCCAAATCATAGCTACATGCTCTTAAA 1841814 36 88.9 0 ............................TT....CA | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.9 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGAAGATTTAAATGCGATAGAGCAACGCAAGTTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGTTGGTTTTGTTATTTCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAAAAAATATCTGCAGACTCTAAATATGTTTAGTATTATTGTTACGAGTCATCCTTATTTTATTATCGAGTCAGATACATTAGCGCTTATTAAAATGAATGGAGAACCGGTAAATACTAAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAAAAAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAAG # Right flank : AGCGGGTATAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //